Gene : Bradi3g17890 B. distachyon v3.1
Defline:  (1 of 3) PTHR10744//PTHR10744:SF10 - 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER Genomic Order:  2266
Name:  ? Bradi3g17890 Secondary Identifier:  ? PAC:32816947
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g17890 0.5kb upstream 0.5kb upstream 4080 true Bd3: 16275044-16279123 Brachypodium distachyon
Bradi3g17890 0.5kb upstream 0.5kb upstream 500 false Bd3: 16278624-16279123 Brachypodium distachyon
Bradi3g17890 0.5kb downstream 0.5kb downstream 4080 true Bd3: 16274544-16278623 Brachypodium distachyon
Bradi3g17890 0.5kb downstream 0.5kb downstream 500 false Bd3: 16274544-16275043 Brachypodium distachyon
Bradi3g17890 1.0kb upstream 1.0kb upstream 4580 true Bd3: 16275044-16279623 Brachypodium distachyon
Bradi3g17890 1.0kb upstream 1.0kb upstream 1000 false Bd3: 16278624-16279623 Brachypodium distachyon
Bradi3g17890 1.0kb downstream 1.0kb downstream 4580 true Bd3: 16274044-16278623 Brachypodium distachyon
Bradi3g17890 1.0kb downstream 1.0kb downstream 1000 false Bd3: 16274044-16275043 Brachypodium distachyon
Bradi3g17890 2.0kb upstream 2.0kb upstream 5580 true Bd3: 16275044-16280623 Brachypodium distachyon
Bradi3g17890 2.0kb upstream 2.0kb upstream 2000 false Bd3: 16278624-16280623 Brachypodium distachyon
Bradi3g17890 2.0kb downstream 2.0kb downstream 5580 true Bd3: 16273044-16278623 Brachypodium distachyon
Bradi3g17890 2.0kb downstream 2.0kb downstream 2000 false Bd3: 16273044-16275043 Brachypodium distachyon
Bradi3g17890 5.0kb upstream 5.0kb upstream 8580 true Bd3: 16275044-16283623 Brachypodium distachyon
Bradi3g17890 5.0kb upstream 5.0kb upstream 5000 false Bd3: 16278624-16283623 Brachypodium distachyon
Bradi3g17890 5.0kb downstream 5.0kb downstream 8580 true Bd3: 16270044-16278623 Brachypodium distachyon
Bradi3g17890 5.0kb downstream 5.0kb downstream 5000 false Bd3: 16270044-16275043 Brachypodium distachyon
Bradi3g17890 10.0kb upstream 10.0kb upstream 13580 true Bd3: 16275044-16288623 Brachypodium distachyon
Bradi3g17890 10.0kb upstream 10.0kb upstream 10000 false Bd3: 16278624-16288623 Brachypodium distachyon
Bradi3g17890 10.0kb downstream 10.0kb downstream 13580 true Bd3: 16265044-16278623 Brachypodium distachyon
Bradi3g17890 10.0kb downstream 10.0kb downstream 10000 false Bd3: 16265044-16275043 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580462 5269 Grass View MSA
122044220 5273 Angiosperm View MSA
121344694 5274 Embryophyte View MSA
123428242 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.016        
cufflinks 3.17        
cufflinks 4.027        
cufflinks 4.437        
cufflinks 8.285       High
cufflinks 2.697        
cufflinks 2.918        
cufflinks 3.117        
cufflinks 2.985        
cufflinks 6.224       High
cufflinks 2.055       Low
cufflinks 2.453        
cufflinks 1.458       Low
cufflinks 1.794       Low
cufflinks 3.346        
cufflinks 2.233       Low
cufflinks 5.402        
cufflinks 3.04        
cufflinks 7.581       High
cufflinks 4.514        
cufflinks 6.539       High
cufflinks 4.128        
cufflinks 3.333        
cufflinks 2.903        
cufflinks 3.861        
cufflinks 6.2       High
cufflinks 2.438        
cufflinks 5.995       High
cufflinks 5.659        
cufflinks 3.931        

0 Strain