Gene : Bradi3g19280 B. distachyon v3.1
Defline:  (1 of 1) PTHR12169:SF6 - LACTATION ELEVATED PROTEIN 1 Genomic Order:  2479
Name:  ? Bradi3g19280 Secondary Identifier:  ? PAC:32817511
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ANAEROFRUCAT-PWY Brachypodium distachyon pathologic  
Bdistachyon ANAGLYCOLYSIS-PWY Brachypodium distachyon pathologic  
Bdistachyon GLUCOSE1PMETAB-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-621 Brachypodium distachyon pathologic  
Bdistachyon PWY-7238 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g19280 0.5kb upstream 0.5kb upstream 7478 true Bd3: 17976130-17983607 Brachypodium distachyon
Bradi3g19280 0.5kb upstream 0.5kb upstream 500 false Bd3: 17976130-17976629 Brachypodium distachyon
Bradi3g19280 0.5kb downstream 0.5kb downstream 7478 true Bd3: 17976630-17984107 Brachypodium distachyon
Bradi3g19280 0.5kb downstream 0.5kb downstream 500 false Bd3: 17983608-17984107 Brachypodium distachyon
Bradi3g19280 1.0kb upstream 1.0kb upstream 7978 true Bd3: 17975630-17983607 Brachypodium distachyon
Bradi3g19280 1.0kb upstream 1.0kb upstream 1000 false Bd3: 17975630-17976629 Brachypodium distachyon
Bradi3g19280 1.0kb downstream 1.0kb downstream 7978 true Bd3: 17976630-17984607 Brachypodium distachyon
Bradi3g19280 1.0kb downstream 1.0kb downstream 1000 false Bd3: 17983608-17984607 Brachypodium distachyon
Bradi3g19280 2.0kb upstream 2.0kb upstream 8978 true Bd3: 17974630-17983607 Brachypodium distachyon
Bradi3g19280 2.0kb upstream 2.0kb upstream 2000 false Bd3: 17974630-17976629 Brachypodium distachyon
Bradi3g19280 2.0kb downstream 2.0kb downstream 8978 true Bd3: 17976630-17985607 Brachypodium distachyon
Bradi3g19280 2.0kb downstream 2.0kb downstream 2000 false Bd3: 17983608-17985607 Brachypodium distachyon
Bradi3g19280 5.0kb upstream 5.0kb upstream 11978 true Bd3: 17971630-17983607 Brachypodium distachyon
Bradi3g19280 5.0kb upstream 5.0kb upstream 5000 false Bd3: 17971630-17976629 Brachypodium distachyon
Bradi3g19280 5.0kb downstream 5.0kb downstream 11978 true Bd3: 17976630-17988607 Brachypodium distachyon
Bradi3g19280 5.0kb downstream 5.0kb downstream 5000 false Bd3: 17983608-17988607 Brachypodium distachyon
Bradi3g19280 10.0kb upstream 10.0kb upstream 16978 true Bd3: 17966630-17983607 Brachypodium distachyon
Bradi3g19280 10.0kb upstream 10.0kb upstream 10000 false Bd3: 17966630-17976629 Brachypodium distachyon
Bradi3g19280 10.0kb downstream 10.0kb downstream 16978 true Bd3: 17976630-17993607 Brachypodium distachyon
Bradi3g19280 10.0kb downstream 10.0kb downstream 10000 false Bd3: 17983608-17993607 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577814 5269 Grass View MSA
122047660 5273 Angiosperm View MSA
121344773 5274 Embryophyte View MSA
123427307 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.996       Low
cufflinks 1.944        
cufflinks 2.207        
cufflinks 2.153        
cufflinks 1.465        
cufflinks 1.459        
cufflinks 1.44        
cufflinks 1.902        
cufflinks 1.686        
cufflinks 1.268       Low
cufflinks 1.834        
cufflinks 1.782        
cufflinks 1.603        
cufflinks 1.407        
cufflinks 1.598        
cufflinks 1.452        
cufflinks 1.538        
cufflinks 1.872        
cufflinks 2.809       High
cufflinks 2.932       High
cufflinks 1.758        
cufflinks 2.028        
cufflinks 2.017        
cufflinks 1.676        
cufflinks 1.317        
cufflinks 1.891        
cufflinks 1.371        
cufflinks 1.802        
cufflinks 1.75        
cufflinks 1.999        

0 Strain