Gene : Bradi3g15320 B. distachyon v3.1
Defline:  (1 of 1) K14400 - pre-mRNA cleavage complex 2 protein Pcf11 (PCF11) Genomic Order:  1915
Name:  ? Bradi3g15320 Secondary Identifier:  ? PAC:32822465
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g15320 0.5kb upstream 0.5kb upstream 10368 true Bd3: 13633302-13643669 Brachypodium distachyon
Bradi3g15320 0.5kb upstream 0.5kb upstream 500 false Bd3: 13633302-13633801 Brachypodium distachyon
Bradi3g15320 0.5kb downstream 0.5kb downstream 10368 true Bd3: 13633802-13644169 Brachypodium distachyon
Bradi3g15320 0.5kb downstream 0.5kb downstream 500 false Bd3: 13643670-13644169 Brachypodium distachyon
Bradi3g15320 1.0kb upstream 1.0kb upstream 10868 true Bd3: 13632802-13643669 Brachypodium distachyon
Bradi3g15320 1.0kb upstream 1.0kb upstream 1000 false Bd3: 13632802-13633801 Brachypodium distachyon
Bradi3g15320 1.0kb downstream 1.0kb downstream 10868 true Bd3: 13633802-13644669 Brachypodium distachyon
Bradi3g15320 1.0kb downstream 1.0kb downstream 1000 false Bd3: 13643670-13644669 Brachypodium distachyon
Bradi3g15320 2.0kb upstream 2.0kb upstream 11868 true Bd3: 13631802-13643669 Brachypodium distachyon
Bradi3g15320 2.0kb upstream 2.0kb upstream 2000 false Bd3: 13631802-13633801 Brachypodium distachyon
Bradi3g15320 2.0kb downstream 2.0kb downstream 11868 true Bd3: 13633802-13645669 Brachypodium distachyon
Bradi3g15320 2.0kb downstream 2.0kb downstream 2000 false Bd3: 13643670-13645669 Brachypodium distachyon
Bradi3g15320 5.0kb upstream 5.0kb upstream 14868 true Bd3: 13628802-13643669 Brachypodium distachyon
Bradi3g15320 5.0kb upstream 5.0kb upstream 5000 false Bd3: 13628802-13633801 Brachypodium distachyon
Bradi3g15320 5.0kb downstream 5.0kb downstream 14868 true Bd3: 13633802-13648669 Brachypodium distachyon
Bradi3g15320 5.0kb downstream 5.0kb downstream 5000 false Bd3: 13643670-13648669 Brachypodium distachyon
Bradi3g15320 10.0kb upstream 10.0kb upstream 19868 true Bd3: 13623802-13643669 Brachypodium distachyon
Bradi3g15320 10.0kb upstream 10.0kb upstream 10000 false Bd3: 13623802-13633801 Brachypodium distachyon
Bradi3g15320 10.0kb downstream 10.0kb downstream 19868 true Bd3: 13633802-13653669 Brachypodium distachyon
Bradi3g15320 10.0kb downstream 10.0kb downstream 10000 false Bd3: 13643670-13653669 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578937 5269 Grass View MSA
122048698 5273 Angiosperm View MSA
121349751 5274 Embryophyte View MSA
123426332 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.376        
cufflinks 1.741        
cufflinks 2.239       High
cufflinks 1.084        
cufflinks 0.693       Low
cufflinks 1.605        
cufflinks 1.683        
cufflinks 1.338        
cufflinks 1.42        
cufflinks 1.267        
cufflinks 2.203       High
cufflinks 1.748        
cufflinks 1.549        
cufflinks 1.304        
cufflinks 1.05        
cufflinks 1.818        
cufflinks 0.914        
cufflinks 2.29       High
cufflinks 1.513        
cufflinks 0.604       Low
cufflinks 0.926        
cufflinks 2.401       High
cufflinks 1.295        
cufflinks 1.208        
cufflinks 1.14        
cufflinks 1.963        
cufflinks 2.066        
cufflinks 2.054        
cufflinks 1.891        
cufflinks 1.61        

0 Strain