Gene : Bradi3g15560 B. distachyon v3.1
Defline:  (1 of 1) 1.1.1.27 - L-lactate dehydrogenase / L-lactic dehydrogenase Genomic Order:  1942
Name:  ? Bradi3g15560 Secondary Identifier:  ? PAC:32823634
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ANAEROFRUCAT-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-5481 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g15560 0.5kb upstream 0.5kb upstream 3054 true Bd3: 13847764-13850817 Brachypodium distachyon
Bradi3g15560 0.5kb upstream 0.5kb upstream 500 false Bd3: 13850318-13850817 Brachypodium distachyon
Bradi3g15560 0.5kb downstream 0.5kb downstream 3054 true Bd3: 13847264-13850317 Brachypodium distachyon
Bradi3g15560 0.5kb downstream 0.5kb downstream 500 false Bd3: 13847264-13847763 Brachypodium distachyon
Bradi3g15560 1.0kb upstream 1.0kb upstream 3554 true Bd3: 13847764-13851317 Brachypodium distachyon
Bradi3g15560 1.0kb upstream 1.0kb upstream 1000 false Bd3: 13850318-13851317 Brachypodium distachyon
Bradi3g15560 1.0kb downstream 1.0kb downstream 3554 true Bd3: 13846764-13850317 Brachypodium distachyon
Bradi3g15560 1.0kb downstream 1.0kb downstream 1000 false Bd3: 13846764-13847763 Brachypodium distachyon
Bradi3g15560 2.0kb upstream 2.0kb upstream 4554 true Bd3: 13847764-13852317 Brachypodium distachyon
Bradi3g15560 2.0kb upstream 2.0kb upstream 2000 false Bd3: 13850318-13852317 Brachypodium distachyon
Bradi3g15560 2.0kb downstream 2.0kb downstream 4554 true Bd3: 13845764-13850317 Brachypodium distachyon
Bradi3g15560 2.0kb downstream 2.0kb downstream 2000 false Bd3: 13845764-13847763 Brachypodium distachyon
Bradi3g15560 5.0kb upstream 5.0kb upstream 7554 true Bd3: 13847764-13855317 Brachypodium distachyon
Bradi3g15560 5.0kb upstream 5.0kb upstream 5000 false Bd3: 13850318-13855317 Brachypodium distachyon
Bradi3g15560 5.0kb downstream 5.0kb downstream 7554 true Bd3: 13842764-13850317 Brachypodium distachyon
Bradi3g15560 5.0kb downstream 5.0kb downstream 5000 false Bd3: 13842764-13847763 Brachypodium distachyon
Bradi3g15560 10.0kb upstream 10.0kb upstream 12554 true Bd3: 13847764-13860317 Brachypodium distachyon
Bradi3g15560 10.0kb upstream 10.0kb upstream 10000 false Bd3: 13850318-13860317 Brachypodium distachyon
Bradi3g15560 10.0kb downstream 10.0kb downstream 12554 true Bd3: 13837764-13850317 Brachypodium distachyon
Bradi3g15560 10.0kb downstream 10.0kb downstream 10000 false Bd3: 13837764-13847763 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573849 5269 Grass View MSA
122045770 5273 Angiosperm View MSA
121350532 5274 Embryophyte View MSA
123381776 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.65        
cufflinks 2.518        
cufflinks 2.051        
cufflinks 2.269        
cufflinks 2.34        
cufflinks 2.147        
cufflinks 3.735        
cufflinks 1.395        
cufflinks 2.189        
cufflinks 2.232        
cufflinks 0.708       Low
cufflinks 1.159        
cufflinks 0.632       Low
cufflinks 0.758       Low
cufflinks 0.757       Low
cufflinks 2.893        
cufflinks 2.475        
cufflinks 11.818     High High
cufflinks 5.345       High
cufflinks 1.419        
cufflinks 9.112       High
cufflinks 1.848        
cufflinks 1.64        
cufflinks 2.048        
cufflinks 2.972        
cufflinks 1.671        
cufflinks 0.96       Low
cufflinks 2.448        
cufflinks 2.002        
cufflinks 4.986       High

0 Strain