Gene : Bradi4g40540 B. distachyon v3.1
Defline:  (1 of 2) PTHR13301//PTHR13301:SF76 - X-BOX TRANSCRIPTION FACTOR-RELATED // SUBFAMILY NOT NAMED Genomic Order:  5223
Name:  ? Bradi4g40540 Secondary Identifier:  ? PAC:32787973
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g40540 0.5kb upstream 0.5kb upstream 4507 true Bd4: 44857749-44862255 Brachypodium distachyon
Bradi4g40540 0.5kb upstream 0.5kb upstream 500 false Bd4: 44857749-44858248 Brachypodium distachyon
Bradi4g40540 0.5kb downstream 0.5kb downstream 4507 true Bd4: 44858249-44862755 Brachypodium distachyon
Bradi4g40540 0.5kb downstream 0.5kb downstream 500 false Bd4: 44862256-44862755 Brachypodium distachyon
Bradi4g40540 1.0kb upstream 1.0kb upstream 5007 true Bd4: 44857249-44862255 Brachypodium distachyon
Bradi4g40540 1.0kb upstream 1.0kb upstream 1000 false Bd4: 44857249-44858248 Brachypodium distachyon
Bradi4g40540 1.0kb downstream 1.0kb downstream 5007 true Bd4: 44858249-44863255 Brachypodium distachyon
Bradi4g40540 1.0kb downstream 1.0kb downstream 1000 false Bd4: 44862256-44863255 Brachypodium distachyon
Bradi4g40540 2.0kb upstream 2.0kb upstream 6007 true Bd4: 44856249-44862255 Brachypodium distachyon
Bradi4g40540 2.0kb upstream 2.0kb upstream 2000 false Bd4: 44856249-44858248 Brachypodium distachyon
Bradi4g40540 2.0kb downstream 2.0kb downstream 6007 true Bd4: 44858249-44864255 Brachypodium distachyon
Bradi4g40540 2.0kb downstream 2.0kb downstream 2000 false Bd4: 44862256-44864255 Brachypodium distachyon
Bradi4g40540 5.0kb upstream 5.0kb upstream 9007 true Bd4: 44853249-44862255 Brachypodium distachyon
Bradi4g40540 5.0kb upstream 5.0kb upstream 5000 false Bd4: 44853249-44858248 Brachypodium distachyon
Bradi4g40540 5.0kb downstream 5.0kb downstream 9007 true Bd4: 44858249-44867255 Brachypodium distachyon
Bradi4g40540 5.0kb downstream 5.0kb downstream 5000 false Bd4: 44862256-44867255 Brachypodium distachyon
Bradi4g40540 10.0kb upstream 10.0kb upstream 14007 true Bd4: 44848249-44862255 Brachypodium distachyon
Bradi4g40540 10.0kb upstream 10.0kb upstream 10000 false Bd4: 44848249-44858248 Brachypodium distachyon
Bradi4g40540 10.0kb downstream 10.0kb downstream 14007 true Bd4: 44858249-44872255 Brachypodium distachyon
Bradi4g40540 10.0kb downstream 10.0kb downstream 10000 false Bd4: 44862256-44872255 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573769 5269 Grass View MSA
122048673 5273 Angiosperm View MSA
123428913 5275 Viridiplantae View MSA
121350837 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.911        
cufflinks 4.727        
cufflinks 5.434        
cufflinks 5.507        
cufflinks 12.781     High High
cufflinks 4.178        
cufflinks 4.275        
cufflinks 4.392        
cufflinks 4.477        
cufflinks 4.986        
cufflinks 6.121        
cufflinks 4.346        
cufflinks 3.162       Low
cufflinks 3.769        
cufflinks 4.102        
cufflinks 3.619        
cufflinks 4.127        
cufflinks 4.277        
cufflinks 9.302       High
cufflinks 21.769     High High
cufflinks 4.524        
cufflinks 5.523        
cufflinks 4.345        
cufflinks 4.295        
cufflinks 4.836        
cufflinks 5.829        
cufflinks 3.004       Low
cufflinks 5.564        
cufflinks 5.31        
cufflinks 5.725        

0 Strain