Gene : Bradi3g16900 B. distachyon v3.1
Defline:  (1 of 1) K12621 - U6 snRNA-associated Sm-like protein LSm2 (LSM2) Genomic Order:  2124
Name:  ? Bradi3g16900 Secondary Identifier:  ? PAC:32815880
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g16900 0.5kb upstream 0.5kb upstream 3557 true Bd3: 15083847-15087403 Brachypodium distachyon
Bradi3g16900 0.5kb upstream 0.5kb upstream 500 false Bd3: 15086904-15087403 Brachypodium distachyon
Bradi3g16900 0.5kb downstream 0.5kb downstream 3557 true Bd3: 15083347-15086903 Brachypodium distachyon
Bradi3g16900 0.5kb downstream 0.5kb downstream 500 false Bd3: 15083347-15083846 Brachypodium distachyon
Bradi3g16900 1.0kb upstream 1.0kb upstream 4057 true Bd3: 15083847-15087903 Brachypodium distachyon
Bradi3g16900 1.0kb upstream 1.0kb upstream 1000 false Bd3: 15086904-15087903 Brachypodium distachyon
Bradi3g16900 1.0kb downstream 1.0kb downstream 4057 true Bd3: 15082847-15086903 Brachypodium distachyon
Bradi3g16900 1.0kb downstream 1.0kb downstream 1000 false Bd3: 15082847-15083846 Brachypodium distachyon
Bradi3g16900 2.0kb upstream 2.0kb upstream 5057 true Bd3: 15083847-15088903 Brachypodium distachyon
Bradi3g16900 2.0kb upstream 2.0kb upstream 2000 false Bd3: 15086904-15088903 Brachypodium distachyon
Bradi3g16900 2.0kb downstream 2.0kb downstream 5057 true Bd3: 15081847-15086903 Brachypodium distachyon
Bradi3g16900 2.0kb downstream 2.0kb downstream 2000 false Bd3: 15081847-15083846 Brachypodium distachyon
Bradi3g16900 5.0kb upstream 5.0kb upstream 8057 true Bd3: 15083847-15091903 Brachypodium distachyon
Bradi3g16900 5.0kb upstream 5.0kb upstream 5000 false Bd3: 15086904-15091903 Brachypodium distachyon
Bradi3g16900 5.0kb downstream 5.0kb downstream 8057 true Bd3: 15078847-15086903 Brachypodium distachyon
Bradi3g16900 5.0kb downstream 5.0kb downstream 5000 false Bd3: 15078847-15083846 Brachypodium distachyon
Bradi3g16900 10.0kb upstream 10.0kb upstream 13057 true Bd3: 15083847-15096903 Brachypodium distachyon
Bradi3g16900 10.0kb upstream 10.0kb upstream 10000 false Bd3: 15086904-15096903 Brachypodium distachyon
Bradi3g16900 10.0kb downstream 10.0kb downstream 13057 true Bd3: 15073847-15086903 Brachypodium distachyon
Bradi3g16900 10.0kb downstream 10.0kb downstream 10000 false Bd3: 15073847-15083846 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581049 5269 Grass View MSA
122043046 5273 Angiosperm View MSA
121347447 5274 Embryophyte View MSA
123425045 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.368        
cufflinks 5.976        
cufflinks 5.731        
cufflinks 6.212        
cufflinks 4.209        
cufflinks 5.458        
cufflinks 7.061        
cufflinks 3.534        
cufflinks 4.625        
cufflinks 5.258        
cufflinks 3.763        
cufflinks 4.076        
cufflinks 3.027       Low
cufflinks 3.365       Low
cufflinks 2.089       Low
cufflinks 4.59        
cufflinks 6.347        
cufflinks 5.417        
cufflinks 7.986       High
cufflinks 5.495        
cufflinks 9.171       High
cufflinks 4.34        
cufflinks 3.396       Low
cufflinks 4.408        
cufflinks 6.752        
cufflinks 6.204        
cufflinks 4.179        
cufflinks 7.482        
cufflinks 6.486        
cufflinks 6.854        

0 Strain