Gene : Bradi3g16950 B. distachyon v3.1
Defline:  (1 of 1) PTHR10509//PTHR10509:SF27 - O-METHYLTRANSFERASE-RELATED // PROTEIN COMT-1 Genomic Order:  2128
Name:  ? Bradi3g16950 Secondary Identifier:  ? PAC:32822830
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-1121 Brachypodium distachyon pathologic  
Bdistachyon PWY-361 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g16950 0.5kb upstream 0.5kb upstream 4568 true Bd3: 15122918-15127485 Brachypodium distachyon
Bradi3g16950 0.5kb upstream 0.5kb upstream 500 false Bd3: 15126986-15127485 Brachypodium distachyon
Bradi3g16950 0.5kb downstream 0.5kb downstream 4568 true Bd3: 15122418-15126985 Brachypodium distachyon
Bradi3g16950 0.5kb downstream 0.5kb downstream 500 false Bd3: 15122418-15122917 Brachypodium distachyon
Bradi3g16950 1.0kb upstream 1.0kb upstream 5068 true Bd3: 15122918-15127985 Brachypodium distachyon
Bradi3g16950 1.0kb upstream 1.0kb upstream 1000 false Bd3: 15126986-15127985 Brachypodium distachyon
Bradi3g16950 1.0kb downstream 1.0kb downstream 5068 true Bd3: 15121918-15126985 Brachypodium distachyon
Bradi3g16950 1.0kb downstream 1.0kb downstream 1000 false Bd3: 15121918-15122917 Brachypodium distachyon
Bradi3g16950 2.0kb upstream 2.0kb upstream 6068 true Bd3: 15122918-15128985 Brachypodium distachyon
Bradi3g16950 2.0kb upstream 2.0kb upstream 2000 false Bd3: 15126986-15128985 Brachypodium distachyon
Bradi3g16950 2.0kb downstream 2.0kb downstream 6068 true Bd3: 15120918-15126985 Brachypodium distachyon
Bradi3g16950 2.0kb downstream 2.0kb downstream 2000 false Bd3: 15120918-15122917 Brachypodium distachyon
Bradi3g16950 5.0kb upstream 5.0kb upstream 9068 true Bd3: 15122918-15131985 Brachypodium distachyon
Bradi3g16950 5.0kb upstream 5.0kb upstream 5000 false Bd3: 15126986-15131985 Brachypodium distachyon
Bradi3g16950 5.0kb downstream 5.0kb downstream 9068 true Bd3: 15117918-15126985 Brachypodium distachyon
Bradi3g16950 5.0kb downstream 5.0kb downstream 5000 false Bd3: 15117918-15122917 Brachypodium distachyon
Bradi3g16950 10.0kb upstream 10.0kb upstream 14068 true Bd3: 15122918-15136985 Brachypodium distachyon
Bradi3g16950 10.0kb upstream 10.0kb upstream 10000 false Bd3: 15126986-15136985 Brachypodium distachyon
Bradi3g16950 10.0kb downstream 10.0kb downstream 14068 true Bd3: 15112918-15126985 Brachypodium distachyon
Bradi3g16950 10.0kb downstream 10.0kb downstream 10000 false Bd3: 15112918-15122917 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588740 5269 Grass View MSA
122046584 5273 Angiosperm View MSA
121345424 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.397        
cufflinks 0.533       High
cufflinks 0.359        
cufflinks 0.485       High
cufflinks 0.136        
cufflinks 0.339        
cufflinks 0.452        
cufflinks 0.277        
cufflinks 0.248        
cufflinks 0.404        
cufflinks 0.056     Low Low
cufflinks 0.246        
cufflinks 0.069       Low
cufflinks 0.058     Low Low
cufflinks 0.147        
cufflinks 0.531       High
cufflinks 0.448        
cufflinks 0.306        
cufflinks 0.247        
cufflinks 0.039     Low Low
cufflinks 0.316        
cufflinks 0.318        
cufflinks 0.228        
cufflinks 0.24        
cufflinks 0.374        
cufflinks 0.332        
cufflinks 0.052     Low Low
cufflinks 0.266        
cufflinks 0.3        
cufflinks 0.423        

0 Strain