Gene : Bradi3g17050 B. distachyon v3.1
Defline:  (1 of 1) PTHR12358//PTHR12358:SF37 - SPHINGOSINE KINASE // SUBFAMILY NOT NAMED Genomic Order:  2139
Name:  ? Bradi3g17050 Secondary Identifier:  ? PAC:32818036
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5129 Brachypodium distachyon pathologic  
Bdistachyon PWY-6483 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g17050 0.5kb upstream 0.5kb upstream 8566 true Bd3: 15196280-15204845 Brachypodium distachyon
Bradi3g17050 0.5kb upstream 0.5kb upstream 500 false Bd3: 15204346-15204845 Brachypodium distachyon
Bradi3g17050 0.5kb downstream 0.5kb downstream 8566 true Bd3: 15195780-15204345 Brachypodium distachyon
Bradi3g17050 0.5kb downstream 0.5kb downstream 500 false Bd3: 15195780-15196279 Brachypodium distachyon
Bradi3g17050 1.0kb upstream 1.0kb upstream 9066 true Bd3: 15196280-15205345 Brachypodium distachyon
Bradi3g17050 1.0kb upstream 1.0kb upstream 1000 false Bd3: 15204346-15205345 Brachypodium distachyon
Bradi3g17050 1.0kb downstream 1.0kb downstream 9066 true Bd3: 15195280-15204345 Brachypodium distachyon
Bradi3g17050 1.0kb downstream 1.0kb downstream 1000 false Bd3: 15195280-15196279 Brachypodium distachyon
Bradi3g17050 2.0kb upstream 2.0kb upstream 10066 true Bd3: 15196280-15206345 Brachypodium distachyon
Bradi3g17050 2.0kb upstream 2.0kb upstream 2000 false Bd3: 15204346-15206345 Brachypodium distachyon
Bradi3g17050 2.0kb downstream 2.0kb downstream 10066 true Bd3: 15194280-15204345 Brachypodium distachyon
Bradi3g17050 2.0kb downstream 2.0kb downstream 2000 false Bd3: 15194280-15196279 Brachypodium distachyon
Bradi3g17050 5.0kb upstream 5.0kb upstream 13066 true Bd3: 15196280-15209345 Brachypodium distachyon
Bradi3g17050 5.0kb upstream 5.0kb upstream 5000 false Bd3: 15204346-15209345 Brachypodium distachyon
Bradi3g17050 5.0kb downstream 5.0kb downstream 13066 true Bd3: 15191280-15204345 Brachypodium distachyon
Bradi3g17050 5.0kb downstream 5.0kb downstream 5000 false Bd3: 15191280-15196279 Brachypodium distachyon
Bradi3g17050 10.0kb upstream 10.0kb upstream 18066 true Bd3: 15196280-15214345 Brachypodium distachyon
Bradi3g17050 10.0kb upstream 10.0kb upstream 10000 false Bd3: 15204346-15214345 Brachypodium distachyon
Bradi3g17050 10.0kb downstream 10.0kb downstream 18066 true Bd3: 15186280-15204345 Brachypodium distachyon
Bradi3g17050 10.0kb downstream 10.0kb downstream 10000 false Bd3: 15186280-15196279 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583970 5269 Grass View MSA
122046814 5273 Angiosperm View MSA
121349004 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.527        
cufflinks 0.877        
cufflinks 0.941       High
cufflinks 0.679        
cufflinks 0.523        
cufflinks 0.698        
cufflinks 0.796        
cufflinks 0.568        
cufflinks 0.535        
cufflinks 0.437       Low
cufflinks 0.727        
cufflinks 0.675        
cufflinks 0.764        
cufflinks 0.645        
cufflinks 0.748        
cufflinks 0.676        
cufflinks 0.52        
cufflinks 0.778        
cufflinks 0.74        
cufflinks 0.666        
cufflinks 0.516        
cufflinks 0.717        
cufflinks 0.544        
cufflinks 0.563        
cufflinks 0.593        
cufflinks 0.956       High
cufflinks 1.247       High
cufflinks 0.893        
cufflinks 0.809        
cufflinks 0.68        

0 Strain