Gene : Bradi3g22760 B. distachyon v3.1
Defline:  (1 of 1) PTHR11777//PTHR11777:SF18 - ALANYL-TRNA SYNTHETASE // ALANINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  2904
Name:  ? Bradi3g22760 Secondary Identifier:  ? PAC:32819857
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g22760 0.5kb upstream 0.5kb upstream 15051 true Bd3: 22028088-22043138 Brachypodium distachyon
Bradi3g22760 0.5kb upstream 0.5kb upstream 500 false Bd3: 22028088-22028587 Brachypodium distachyon
Bradi3g22760 0.5kb downstream 0.5kb downstream 15051 true Bd3: 22028588-22043638 Brachypodium distachyon
Bradi3g22760 0.5kb downstream 0.5kb downstream 500 false Bd3: 22043139-22043638 Brachypodium distachyon
Bradi3g22760 1.0kb upstream 1.0kb upstream 15551 true Bd3: 22027588-22043138 Brachypodium distachyon
Bradi3g22760 1.0kb upstream 1.0kb upstream 1000 false Bd3: 22027588-22028587 Brachypodium distachyon
Bradi3g22760 1.0kb downstream 1.0kb downstream 15551 true Bd3: 22028588-22044138 Brachypodium distachyon
Bradi3g22760 1.0kb downstream 1.0kb downstream 1000 false Bd3: 22043139-22044138 Brachypodium distachyon
Bradi3g22760 2.0kb upstream 2.0kb upstream 16551 true Bd3: 22026588-22043138 Brachypodium distachyon
Bradi3g22760 2.0kb upstream 2.0kb upstream 2000 false Bd3: 22026588-22028587 Brachypodium distachyon
Bradi3g22760 2.0kb downstream 2.0kb downstream 16551 true Bd3: 22028588-22045138 Brachypodium distachyon
Bradi3g22760 2.0kb downstream 2.0kb downstream 2000 false Bd3: 22043139-22045138 Brachypodium distachyon
Bradi3g22760 5.0kb upstream 5.0kb upstream 19551 true Bd3: 22023588-22043138 Brachypodium distachyon
Bradi3g22760 5.0kb upstream 5.0kb upstream 5000 false Bd3: 22023588-22028587 Brachypodium distachyon
Bradi3g22760 5.0kb downstream 5.0kb downstream 19551 true Bd3: 22028588-22048138 Brachypodium distachyon
Bradi3g22760 5.0kb downstream 5.0kb downstream 5000 false Bd3: 22043139-22048138 Brachypodium distachyon
Bradi3g22760 10.0kb upstream 10.0kb upstream 24551 true Bd3: 22018588-22043138 Brachypodium distachyon
Bradi3g22760 10.0kb upstream 10.0kb upstream 10000 false Bd3: 22018588-22028587 Brachypodium distachyon
Bradi3g22760 10.0kb downstream 10.0kb downstream 24551 true Bd3: 22028588-22053138 Brachypodium distachyon
Bradi3g22760 10.0kb downstream 10.0kb downstream 10000 false Bd3: 22043139-22053138 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569806 5269 Grass View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.222     High  
cufflinks 20.337     High  
cufflinks 22.303     High High
cufflinks 18.314     High  
cufflinks 6.28       Low
cufflinks 16.888     High  
cufflinks 15.68     High  
cufflinks 15.723     High  
cufflinks 16.139     High  
cufflinks 10.696     High  
cufflinks 21.982     High High
cufflinks 16.422     High  
cufflinks 14.04     High  
cufflinks 18.008     High  
cufflinks 12.542     High  
cufflinks 18.918     High  
cufflinks 8.8        
cufflinks 21.179     High  
cufflinks 10.559        
cufflinks 3.854       Low
cufflinks 9.28        
cufflinks 19.531     High  
cufflinks 15.962     High  
cufflinks 15.136     High  
cufflinks 13.972     High  
cufflinks 17.905     High  
cufflinks 18.018     High  
cufflinks 16.821     High  
cufflinks 17.229     High  
cufflinks 13.303     High  

0 Strain