Gene : Bradi3g26680 B. distachyon v3.1
Defline:  (1 of 1) PTHR21091:SF18 - RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I Genomic Order:  3135
Name:  ? Bradi3g26680 Secondary Identifier:  ? PAC:32820500
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g26680 0.5kb upstream 0.5kb upstream 4905 true Bd3: 27157625-27162529 Brachypodium distachyon
Bradi3g26680 0.5kb upstream 0.5kb upstream 500 false Bd3: 27162030-27162529 Brachypodium distachyon
Bradi3g26680 0.5kb downstream 0.5kb downstream 4905 true Bd3: 27157125-27162029 Brachypodium distachyon
Bradi3g26680 0.5kb downstream 0.5kb downstream 500 false Bd3: 27157125-27157624 Brachypodium distachyon
Bradi3g26680 1.0kb upstream 1.0kb upstream 5405 true Bd3: 27157625-27163029 Brachypodium distachyon
Bradi3g26680 1.0kb upstream 1.0kb upstream 1000 false Bd3: 27162030-27163029 Brachypodium distachyon
Bradi3g26680 1.0kb downstream 1.0kb downstream 5405 true Bd3: 27156625-27162029 Brachypodium distachyon
Bradi3g26680 1.0kb downstream 1.0kb downstream 1000 false Bd3: 27156625-27157624 Brachypodium distachyon
Bradi3g26680 2.0kb upstream 2.0kb upstream 6405 true Bd3: 27157625-27164029 Brachypodium distachyon
Bradi3g26680 2.0kb upstream 2.0kb upstream 2000 false Bd3: 27162030-27164029 Brachypodium distachyon
Bradi3g26680 2.0kb downstream 2.0kb downstream 6405 true Bd3: 27155625-27162029 Brachypodium distachyon
Bradi3g26680 2.0kb downstream 2.0kb downstream 2000 false Bd3: 27155625-27157624 Brachypodium distachyon
Bradi3g26680 5.0kb upstream 5.0kb upstream 9405 true Bd3: 27157625-27167029 Brachypodium distachyon
Bradi3g26680 5.0kb upstream 5.0kb upstream 5000 false Bd3: 27162030-27167029 Brachypodium distachyon
Bradi3g26680 5.0kb downstream 5.0kb downstream 9405 true Bd3: 27152625-27162029 Brachypodium distachyon
Bradi3g26680 5.0kb downstream 5.0kb downstream 5000 false Bd3: 27152625-27157624 Brachypodium distachyon
Bradi3g26680 10.0kb upstream 10.0kb upstream 14405 true Bd3: 27157625-27172029 Brachypodium distachyon
Bradi3g26680 10.0kb upstream 10.0kb upstream 10000 false Bd3: 27162030-27172029 Brachypodium distachyon
Bradi3g26680 10.0kb downstream 10.0kb downstream 14405 true Bd3: 27147625-27162029 Brachypodium distachyon
Bradi3g26680 10.0kb downstream 10.0kb downstream 10000 false Bd3: 27147625-27157624 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569923 5269 Grass View MSA
122043278 5273 Angiosperm View MSA
121347213 5274 Embryophyte View MSA
123424563 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.132        
cufflinks 1.728       High
cufflinks 1.373        
cufflinks 1.507        
cufflinks 0.602       Low
cufflinks 1.42        
cufflinks 1.584       High
cufflinks 0.89        
cufflinks 0.967        
cufflinks 1.111        
cufflinks 0.812        
cufflinks 0.954        
cufflinks 0.633        
cufflinks 0.703        
cufflinks 0.761        
cufflinks 1.732       High
cufflinks 1.207        
cufflinks 0.828        
cufflinks 1.025        
cufflinks 0.298       Low
cufflinks 1.082        
cufflinks 1.088        
cufflinks 0.747        
cufflinks 0.859        
cufflinks 1.36        
cufflinks 1.453        
cufflinks 0.686        
cufflinks 1.192        
cufflinks 1.095        
cufflinks 1.294        

0 Strain