Gene : Bradi4g38090 B. distachyon v3.1
Defline:  (1 of 1) PTHR11353//PTHR11353:SF99 - CHAPERONIN // CHAPERONIN 60 SUBUNIT ALPHA 2, CHLOROPLASTIC Genomic Order:  4920
Name:  ? Bradi4g38090 Secondary Identifier:  ? PAC:32785942
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g38090 0.5kb upstream 0.5kb upstream 5389 true Bd4: 43012955-43018343 Brachypodium distachyon
Bradi4g38090 0.5kb upstream 0.5kb upstream 500 false Bd4: 43012955-43013454 Brachypodium distachyon
Bradi4g38090 0.5kb downstream 0.5kb downstream 5389 true Bd4: 43013455-43018843 Brachypodium distachyon
Bradi4g38090 0.5kb downstream 0.5kb downstream 500 false Bd4: 43018344-43018843 Brachypodium distachyon
Bradi4g38090 1.0kb upstream 1.0kb upstream 5889 true Bd4: 43012455-43018343 Brachypodium distachyon
Bradi4g38090 1.0kb upstream 1.0kb upstream 1000 false Bd4: 43012455-43013454 Brachypodium distachyon
Bradi4g38090 1.0kb downstream 1.0kb downstream 5889 true Bd4: 43013455-43019343 Brachypodium distachyon
Bradi4g38090 1.0kb downstream 1.0kb downstream 1000 false Bd4: 43018344-43019343 Brachypodium distachyon
Bradi4g38090 2.0kb upstream 2.0kb upstream 6889 true Bd4: 43011455-43018343 Brachypodium distachyon
Bradi4g38090 2.0kb upstream 2.0kb upstream 2000 false Bd4: 43011455-43013454 Brachypodium distachyon
Bradi4g38090 2.0kb downstream 2.0kb downstream 6889 true Bd4: 43013455-43020343 Brachypodium distachyon
Bradi4g38090 2.0kb downstream 2.0kb downstream 2000 false Bd4: 43018344-43020343 Brachypodium distachyon
Bradi4g38090 5.0kb upstream 5.0kb upstream 9889 true Bd4: 43008455-43018343 Brachypodium distachyon
Bradi4g38090 5.0kb upstream 5.0kb upstream 5000 false Bd4: 43008455-43013454 Brachypodium distachyon
Bradi4g38090 5.0kb downstream 5.0kb downstream 9889 true Bd4: 43013455-43023343 Brachypodium distachyon
Bradi4g38090 5.0kb downstream 5.0kb downstream 5000 false Bd4: 43018344-43023343 Brachypodium distachyon
Bradi4g38090 10.0kb upstream 10.0kb upstream 14889 true Bd4: 43003455-43018343 Brachypodium distachyon
Bradi4g38090 10.0kb upstream 10.0kb upstream 10000 false Bd4: 43003455-43013454 Brachypodium distachyon
Bradi4g38090 10.0kb downstream 10.0kb downstream 14889 true Bd4: 43013455-43028343 Brachypodium distachyon
Bradi4g38090 10.0kb downstream 10.0kb downstream 10000 false Bd4: 43018344-43028343 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589408 5269 Grass View MSA
122048196 5273 Angiosperm View MSA
121346372 5274 Embryophyte View MSA
123427883 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.356        
cufflinks 0.95       High
cufflinks 0.563        
cufflinks 0.681        
cufflinks 0.108       Low
cufflinks 0.589        
cufflinks 0.762        
cufflinks 0.437        
cufflinks 0.55        
cufflinks 0.298        
cufflinks 0.2        
cufflinks 0.466        
cufflinks 0.125       Low
cufflinks 0.16        
cufflinks 0.145        
cufflinks 0.749        
cufflinks 0.266        
cufflinks 0.5        
cufflinks 0.318        
cufflinks 0.03     Low Low
cufflinks 0.346        
cufflinks 0.423        
cufflinks 0.324        
cufflinks 0.464        
cufflinks 0.627        
cufflinks 0.368        
cufflinks 0.149        
cufflinks 0.335        
cufflinks 0.389        
cufflinks 0.625        

0 Strain