Gene : Bradi3g21588 B. distachyon v3.1
Defline:  (1 of 1) PF01834 - XRCC1 N terminal domain (XRCC1_N) Genomic Order:  2782
Name:  ? Bradi3g21588 Secondary Identifier:  ? PAC:32821423
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g21588 0.5kb upstream 0.5kb upstream 17216 true Bd3: 20783353-20800568 Brachypodium distachyon
Bradi3g21588 0.5kb upstream 0.5kb upstream 500 false Bd3: 20783353-20783852 Brachypodium distachyon
Bradi3g21588 0.5kb downstream 0.5kb downstream 17216 true Bd3: 20783853-20801068 Brachypodium distachyon
Bradi3g21588 0.5kb downstream 0.5kb downstream 500 false Bd3: 20800569-20801068 Brachypodium distachyon
Bradi3g21588 1.0kb upstream 1.0kb upstream 17716 true Bd3: 20782853-20800568 Brachypodium distachyon
Bradi3g21588 1.0kb upstream 1.0kb upstream 1000 false Bd3: 20782853-20783852 Brachypodium distachyon
Bradi3g21588 1.0kb downstream 1.0kb downstream 17716 true Bd3: 20783853-20801568 Brachypodium distachyon
Bradi3g21588 1.0kb downstream 1.0kb downstream 1000 false Bd3: 20800569-20801568 Brachypodium distachyon
Bradi3g21588 2.0kb upstream 2.0kb upstream 18716 true Bd3: 20781853-20800568 Brachypodium distachyon
Bradi3g21588 2.0kb upstream 2.0kb upstream 2000 false Bd3: 20781853-20783852 Brachypodium distachyon
Bradi3g21588 2.0kb downstream 2.0kb downstream 18716 true Bd3: 20783853-20802568 Brachypodium distachyon
Bradi3g21588 2.0kb downstream 2.0kb downstream 2000 false Bd3: 20800569-20802568 Brachypodium distachyon
Bradi3g21588 5.0kb upstream 5.0kb upstream 21716 true Bd3: 20778853-20800568 Brachypodium distachyon
Bradi3g21588 5.0kb upstream 5.0kb upstream 5000 false Bd3: 20778853-20783852 Brachypodium distachyon
Bradi3g21588 5.0kb downstream 5.0kb downstream 21716 true Bd3: 20783853-20805568 Brachypodium distachyon
Bradi3g21588 5.0kb downstream 5.0kb downstream 5000 false Bd3: 20800569-20805568 Brachypodium distachyon
Bradi3g21588 10.0kb upstream 10.0kb upstream 26716 true Bd3: 20773853-20800568 Brachypodium distachyon
Bradi3g21588 10.0kb upstream 10.0kb upstream 10000 false Bd3: 20773853-20783852 Brachypodium distachyon
Bradi3g21588 10.0kb downstream 10.0kb downstream 26716 true Bd3: 20783853-20810568 Brachypodium distachyon
Bradi3g21588 10.0kb downstream 10.0kb downstream 10000 false Bd3: 20800569-20810568 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572066 5269 Grass View MSA
122043053 5273 Angiosperm View MSA
121347924 5274 Embryophyte View MSA
123380675 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.425        
cufflinks 0.909        
cufflinks 1.085       High
cufflinks 0.707        
cufflinks 0.184       Low
cufflinks 0.795        
cufflinks 0.706        
cufflinks 0.603        
cufflinks 0.786        
cufflinks 0.649        
cufflinks 0.903        
cufflinks 0.632        
cufflinks 0.54        
cufflinks 0.468        
cufflinks 0.276        
cufflinks 0.8        
cufflinks 0.364        
cufflinks 0.699        
cufflinks 0.458        
cufflinks 0.058     Low Low
cufflinks 0.361        
cufflinks 1.069       High
cufflinks 0.642        
cufflinks 0.593        
cufflinks 0.703        
cufflinks 1.003        
cufflinks 0.678        
cufflinks 0.985        
cufflinks 1.017       High
cufflinks 0.583        

0 Strain