Gene : Bradi3g21852 B. distachyon v3.1
Defline:  (1 of 1) PTHR31846:SF10 - CHLOROPLASTIC GROUP IIA INTRON SPLICING FACILITATOR CRS1, CHLOROPLASTIC Genomic Order:  2808
Name:  ? Bradi3g21852 Secondary Identifier:  ? PAC:32821353
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g21852 0.5kb upstream 0.5kb upstream 5086 true Bd3: 21110831-21115916 Brachypodium distachyon
Bradi3g21852 0.5kb upstream 0.5kb upstream 500 false Bd3: 21110831-21111330 Brachypodium distachyon
Bradi3g21852 0.5kb downstream 0.5kb downstream 5086 true Bd3: 21111331-21116416 Brachypodium distachyon
Bradi3g21852 0.5kb downstream 0.5kb downstream 500 false Bd3: 21115917-21116416 Brachypodium distachyon
Bradi3g21852 1.0kb upstream 1.0kb upstream 5586 true Bd3: 21110331-21115916 Brachypodium distachyon
Bradi3g21852 1.0kb upstream 1.0kb upstream 1000 false Bd3: 21110331-21111330 Brachypodium distachyon
Bradi3g21852 1.0kb downstream 1.0kb downstream 5586 true Bd3: 21111331-21116916 Brachypodium distachyon
Bradi3g21852 1.0kb downstream 1.0kb downstream 1000 false Bd3: 21115917-21116916 Brachypodium distachyon
Bradi3g21852 2.0kb upstream 2.0kb upstream 6586 true Bd3: 21109331-21115916 Brachypodium distachyon
Bradi3g21852 2.0kb upstream 2.0kb upstream 2000 false Bd3: 21109331-21111330 Brachypodium distachyon
Bradi3g21852 2.0kb downstream 2.0kb downstream 6586 true Bd3: 21111331-21117916 Brachypodium distachyon
Bradi3g21852 2.0kb downstream 2.0kb downstream 2000 false Bd3: 21115917-21117916 Brachypodium distachyon
Bradi3g21852 5.0kb upstream 5.0kb upstream 9586 true Bd3: 21106331-21115916 Brachypodium distachyon
Bradi3g21852 5.0kb upstream 5.0kb upstream 5000 false Bd3: 21106331-21111330 Brachypodium distachyon
Bradi3g21852 5.0kb downstream 5.0kb downstream 9586 true Bd3: 21111331-21120916 Brachypodium distachyon
Bradi3g21852 5.0kb downstream 5.0kb downstream 5000 false Bd3: 21115917-21120916 Brachypodium distachyon
Bradi3g21852 10.0kb upstream 10.0kb upstream 14586 true Bd3: 21101331-21115916 Brachypodium distachyon
Bradi3g21852 10.0kb upstream 10.0kb upstream 10000 false Bd3: 21101331-21111330 Brachypodium distachyon
Bradi3g21852 10.0kb downstream 10.0kb downstream 14586 true Bd3: 21111331-21125916 Brachypodium distachyon
Bradi3g21852 10.0kb downstream 10.0kb downstream 10000 false Bd3: 21115917-21125916 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569221 5269 Grass View MSA
122046600 5273 Angiosperm View MSA
121310632 5274 Embryophyte View MSA
123348066 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.9        
cufflinks 13.671     High  
cufflinks 15.562     High  
cufflinks 14.188     High  
cufflinks 2.512       Low
cufflinks 10.905     High  
cufflinks 10.475     High  
cufflinks 8.796        
cufflinks 10.485     High  
cufflinks 6.941        
cufflinks 12.05     High  
cufflinks 11.664     High  
cufflinks 11.016     High  
cufflinks 11.101     High  
cufflinks 6.081        
cufflinks 11.588     High  
cufflinks 4.885        
cufflinks 1.243       Low
cufflinks 2.758        
cufflinks 0.454       Low
cufflinks 3.75        
cufflinks 11.403     High  
cufflinks 9.616     High  
cufflinks 10.53     High  
cufflinks 10.899     High  
cufflinks 14.497     High  
cufflinks 11.888     High  
cufflinks 13.021     High  
cufflinks 12.665     High  
cufflinks 6.382        

0 Strain