Gene : Bradi3g29230 B. distachyon v3.1
Defline:  (1 of 2) 2.3.1.74 - Naringenin-chalcone synthase / Flavonone synthase Genomic Order:  3518
Name:  ? Bradi3g29230 Secondary Identifier:  ? PAC:32818110
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY1F-FLAVSYN Brachypodium distachyon pathologic  
Bdistachyon PWY-6787 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g29230 0.5kb upstream 0.5kb upstream 2595 true Bd3: 30869280-30871874 Brachypodium distachyon
Bradi3g29230 0.5kb upstream 0.5kb upstream 500 false Bd3: 30869280-30869779 Brachypodium distachyon
Bradi3g29230 0.5kb downstream 0.5kb downstream 2595 true Bd3: 30869780-30872374 Brachypodium distachyon
Bradi3g29230 0.5kb downstream 0.5kb downstream 500 false Bd3: 30871875-30872374 Brachypodium distachyon
Bradi3g29230 1.0kb upstream 1.0kb upstream 3095 true Bd3: 30868780-30871874 Brachypodium distachyon
Bradi3g29230 1.0kb upstream 1.0kb upstream 1000 false Bd3: 30868780-30869779 Brachypodium distachyon
Bradi3g29230 1.0kb downstream 1.0kb downstream 3095 true Bd3: 30869780-30872874 Brachypodium distachyon
Bradi3g29230 1.0kb downstream 1.0kb downstream 1000 false Bd3: 30871875-30872874 Brachypodium distachyon
Bradi3g29230 2.0kb upstream 2.0kb upstream 4095 true Bd3: 30867780-30871874 Brachypodium distachyon
Bradi3g29230 2.0kb upstream 2.0kb upstream 2000 false Bd3: 30867780-30869779 Brachypodium distachyon
Bradi3g29230 2.0kb downstream 2.0kb downstream 4095 true Bd3: 30869780-30873874 Brachypodium distachyon
Bradi3g29230 2.0kb downstream 2.0kb downstream 2000 false Bd3: 30871875-30873874 Brachypodium distachyon
Bradi3g29230 5.0kb upstream 5.0kb upstream 7095 true Bd3: 30864780-30871874 Brachypodium distachyon
Bradi3g29230 5.0kb upstream 5.0kb upstream 5000 false Bd3: 30864780-30869779 Brachypodium distachyon
Bradi3g29230 5.0kb downstream 5.0kb downstream 7095 true Bd3: 30869780-30876874 Brachypodium distachyon
Bradi3g29230 5.0kb downstream 5.0kb downstream 5000 false Bd3: 30871875-30876874 Brachypodium distachyon
Bradi3g29230 10.0kb upstream 10.0kb upstream 12095 true Bd3: 30859780-30871874 Brachypodium distachyon
Bradi3g29230 10.0kb upstream 10.0kb upstream 10000 false Bd3: 30859780-30869779 Brachypodium distachyon
Bradi3g29230 10.0kb downstream 10.0kb downstream 12095 true Bd3: 30869780-30881874 Brachypodium distachyon
Bradi3g29230 10.0kb downstream 10.0kb downstream 10000 false Bd3: 30871875-30881874 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124568709 5269 Grass View MSA
122045794 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low  
cufflinks 0.011     Low  
cufflinks 0.018     Low  
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.016     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.236       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.308       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.016     Low  
cufflinks 0.022     Low  
cufflinks 0.009     Low  
cufflinks 0.016     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.513       High

0 Strain