Gene : Bradi3g29300 B. distachyon v3.1
Defline:  (1 of 8) PF01966 - HD domain (HD) Genomic Order:  3526
Name:  ? Bradi3g29300 Secondary Identifier:  ? PAC:32823752
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g29300 0.5kb upstream 0.5kb upstream 4628 true Bd3: 31032178-31036805 Brachypodium distachyon
Bradi3g29300 0.5kb upstream 0.5kb upstream 500 false Bd3: 31032178-31032677 Brachypodium distachyon
Bradi3g29300 0.5kb downstream 0.5kb downstream 4628 true Bd3: 31032678-31037305 Brachypodium distachyon
Bradi3g29300 0.5kb downstream 0.5kb downstream 500 false Bd3: 31036806-31037305 Brachypodium distachyon
Bradi3g29300 1.0kb upstream 1.0kb upstream 5128 true Bd3: 31031678-31036805 Brachypodium distachyon
Bradi3g29300 1.0kb upstream 1.0kb upstream 1000 false Bd3: 31031678-31032677 Brachypodium distachyon
Bradi3g29300 1.0kb downstream 1.0kb downstream 5128 true Bd3: 31032678-31037805 Brachypodium distachyon
Bradi3g29300 1.0kb downstream 1.0kb downstream 1000 false Bd3: 31036806-31037805 Brachypodium distachyon
Bradi3g29300 2.0kb upstream 2.0kb upstream 6128 true Bd3: 31030678-31036805 Brachypodium distachyon
Bradi3g29300 2.0kb upstream 2.0kb upstream 2000 false Bd3: 31030678-31032677 Brachypodium distachyon
Bradi3g29300 2.0kb downstream 2.0kb downstream 6128 true Bd3: 31032678-31038805 Brachypodium distachyon
Bradi3g29300 2.0kb downstream 2.0kb downstream 2000 false Bd3: 31036806-31038805 Brachypodium distachyon
Bradi3g29300 5.0kb upstream 5.0kb upstream 9128 true Bd3: 31027678-31036805 Brachypodium distachyon
Bradi3g29300 5.0kb upstream 5.0kb upstream 5000 false Bd3: 31027678-31032677 Brachypodium distachyon
Bradi3g29300 5.0kb downstream 5.0kb downstream 9128 true Bd3: 31032678-31041805 Brachypodium distachyon
Bradi3g29300 5.0kb downstream 5.0kb downstream 5000 false Bd3: 31036806-31041805 Brachypodium distachyon
Bradi3g29300 10.0kb upstream 10.0kb upstream 14128 true Bd3: 31022678-31036805 Brachypodium distachyon
Bradi3g29300 10.0kb upstream 10.0kb upstream 10000 false Bd3: 31022678-31032677 Brachypodium distachyon
Bradi3g29300 10.0kb downstream 10.0kb downstream 14128 true Bd3: 31032678-31046805 Brachypodium distachyon
Bradi3g29300 10.0kb downstream 10.0kb downstream 10000 false Bd3: 31036806-31046805 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570531 5269 Grass View MSA
122047991 5273 Angiosperm View MSA
121346124 5274 Embryophyte View MSA
123423985 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.834        
cufflinks 12.278     High  
cufflinks 14.977     High High
cufflinks 13.915     High  
cufflinks 9.437     High  
cufflinks 10.512     High  
cufflinks 11.355     High  
cufflinks 10.654     High  
cufflinks 10.318     High  
cufflinks 15.541     High High
cufflinks 9.923     High  
cufflinks 9.899     High  
cufflinks 8.787     High  
cufflinks 10.123     High  
cufflinks 11.35     High  
cufflinks 10.975     High  
cufflinks 12.717     High  
cufflinks 8.578       Low
cufflinks 9.555        
cufflinks 5.468       Low
cufflinks 10.592        
cufflinks 14.053     High  
cufflinks 10.683     High  
cufflinks 9.771     High  
cufflinks 11.948     High  
cufflinks 18.06     High High
cufflinks 11.125     High  
cufflinks 17.697     High High
cufflinks 16.349     High High
cufflinks 10.392        

0 Strain