Gene : Bradi3g26930 B. distachyon v3.1
Defline:  (1 of 1) PTHR23418:SF4 - 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4 Genomic Order:  3165
Name:  ? Bradi3g26930 Secondary Identifier:  ? PAC:32820849
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-4361 Brachypodium distachyon pathologic  
Bdistachyon PWY-7270 Brachypodium distachyon pathologic  
Bdistachyon PWY-7528 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g26930 0.5kb upstream 0.5kb upstream 3004 true Bd3: 27432604-27435607 Brachypodium distachyon
Bradi3g26930 0.5kb upstream 0.5kb upstream 500 false Bd3: 27435108-27435607 Brachypodium distachyon
Bradi3g26930 0.5kb downstream 0.5kb downstream 3004 true Bd3: 27432104-27435107 Brachypodium distachyon
Bradi3g26930 0.5kb downstream 0.5kb downstream 500 false Bd3: 27432104-27432603 Brachypodium distachyon
Bradi3g26930 1.0kb upstream 1.0kb upstream 3504 true Bd3: 27432604-27436107 Brachypodium distachyon
Bradi3g26930 1.0kb upstream 1.0kb upstream 1000 false Bd3: 27435108-27436107 Brachypodium distachyon
Bradi3g26930 1.0kb downstream 1.0kb downstream 3504 true Bd3: 27431604-27435107 Brachypodium distachyon
Bradi3g26930 1.0kb downstream 1.0kb downstream 1000 false Bd3: 27431604-27432603 Brachypodium distachyon
Bradi3g26930 2.0kb upstream 2.0kb upstream 4504 true Bd3: 27432604-27437107 Brachypodium distachyon
Bradi3g26930 2.0kb upstream 2.0kb upstream 2000 false Bd3: 27435108-27437107 Brachypodium distachyon
Bradi3g26930 2.0kb downstream 2.0kb downstream 4504 true Bd3: 27430604-27435107 Brachypodium distachyon
Bradi3g26930 2.0kb downstream 2.0kb downstream 2000 false Bd3: 27430604-27432603 Brachypodium distachyon
Bradi3g26930 5.0kb upstream 5.0kb upstream 7504 true Bd3: 27432604-27440107 Brachypodium distachyon
Bradi3g26930 5.0kb upstream 5.0kb upstream 5000 false Bd3: 27435108-27440107 Brachypodium distachyon
Bradi3g26930 5.0kb downstream 5.0kb downstream 7504 true Bd3: 27427604-27435107 Brachypodium distachyon
Bradi3g26930 5.0kb downstream 5.0kb downstream 5000 false Bd3: 27427604-27432603 Brachypodium distachyon
Bradi3g26930 10.0kb upstream 10.0kb upstream 12504 true Bd3: 27432604-27445107 Brachypodium distachyon
Bradi3g26930 10.0kb upstream 10.0kb upstream 10000 false Bd3: 27435108-27445107 Brachypodium distachyon
Bradi3g26930 10.0kb downstream 10.0kb downstream 12504 true Bd3: 27422604-27435107 Brachypodium distachyon
Bradi3g26930 10.0kb downstream 10.0kb downstream 10000 false Bd3: 27422604-27432603 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124572378 5269 Grass View MSA
122046510 5273 Angiosperm View MSA
121343851 5274 Embryophyte View MSA
123424670 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 86.547     High  
cufflinks 37.436     High  
cufflinks 13.427     High Low
cufflinks 44.34     High  
cufflinks 124.29     High  
cufflinks 93.924     High  
cufflinks 62.351     High  
cufflinks 121.853     High  
cufflinks 94.681     High  
cufflinks 91.674     High  
cufflinks 201.251     High High
cufflinks 125.038     High  
cufflinks 139.09     High  
cufflinks 202.32     High High
cufflinks 160.019     High  
cufflinks 71.136     High  
cufflinks 129.514     High  
cufflinks 8.06       Low
cufflinks 82.99     High  
cufflinks 169.215     High  
cufflinks 37.036     High  
cufflinks 55.577     High  
cufflinks 130.091     High  
cufflinks 125.083     High  
cufflinks 110.902     High  
cufflinks 27.069     High Low
cufflinks 149.829     High  
cufflinks 35.536     High  
cufflinks 47.879     High  
cufflinks 19.018     High Low

0 Strain