Gene : Bradi3g26967 B. distachyon v3.1
Defline:  (1 of 1) PTHR33428:SF1 - CHLOROPHYLLASE-2, CHLOROPLASTIC Genomic Order:  3170
Name:  ? Bradi3g26967 Secondary Identifier:  ? PAC:32819145
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5098 Brachypodium distachyon pathologic  
Bdistachyon PWY-6927 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g26967 0.5kb upstream 0.5kb upstream 2023 true Bd3: 27448793-27450815 Brachypodium distachyon
Bradi3g26967 0.5kb upstream 0.5kb upstream 500 false Bd3: 27450316-27450815 Brachypodium distachyon
Bradi3g26967 0.5kb downstream 0.5kb downstream 2023 true Bd3: 27448293-27450315 Brachypodium distachyon
Bradi3g26967 0.5kb downstream 0.5kb downstream 500 false Bd3: 27448293-27448792 Brachypodium distachyon
Bradi3g26967 1.0kb upstream 1.0kb upstream 2523 true Bd3: 27448793-27451315 Brachypodium distachyon
Bradi3g26967 1.0kb upstream 1.0kb upstream 1000 false Bd3: 27450316-27451315 Brachypodium distachyon
Bradi3g26967 1.0kb downstream 1.0kb downstream 2523 true Bd3: 27447793-27450315 Brachypodium distachyon
Bradi3g26967 1.0kb downstream 1.0kb downstream 1000 false Bd3: 27447793-27448792 Brachypodium distachyon
Bradi3g26967 2.0kb upstream 2.0kb upstream 3523 true Bd3: 27448793-27452315 Brachypodium distachyon
Bradi3g26967 2.0kb upstream 2.0kb upstream 2000 false Bd3: 27450316-27452315 Brachypodium distachyon
Bradi3g26967 2.0kb downstream 2.0kb downstream 3523 true Bd3: 27446793-27450315 Brachypodium distachyon
Bradi3g26967 2.0kb downstream 2.0kb downstream 2000 false Bd3: 27446793-27448792 Brachypodium distachyon
Bradi3g26967 5.0kb upstream 5.0kb upstream 6523 true Bd3: 27448793-27455315 Brachypodium distachyon
Bradi3g26967 5.0kb upstream 5.0kb upstream 5000 false Bd3: 27450316-27455315 Brachypodium distachyon
Bradi3g26967 5.0kb downstream 5.0kb downstream 6523 true Bd3: 27443793-27450315 Brachypodium distachyon
Bradi3g26967 5.0kb downstream 5.0kb downstream 5000 false Bd3: 27443793-27448792 Brachypodium distachyon
Bradi3g26967 10.0kb upstream 10.0kb upstream 11523 true Bd3: 27448793-27460315 Brachypodium distachyon
Bradi3g26967 10.0kb upstream 10.0kb upstream 10000 false Bd3: 27450316-27460315 Brachypodium distachyon
Bradi3g26967 10.0kb downstream 10.0kb downstream 11523 true Bd3: 27438793-27450315 Brachypodium distachyon
Bradi3g26967 10.0kb downstream 10.0kb downstream 10000 false Bd3: 27438793-27448792 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570065 5269 Grass View MSA
122043389 5273 Angiosperm View MSA
121344751 5274 Embryophyte View MSA
123428003 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.232     High High
cufflinks 20.779     High  
cufflinks 8.411        
cufflinks 16.35     High  
cufflinks 1.517       Low
cufflinks 23.958     High  
cufflinks 27.899     High  
cufflinks 2.649        
cufflinks 16.869     High  
cufflinks 0.775       Low
cufflinks 25.365     High  
cufflinks 7.495        
cufflinks 18.146     High  
cufflinks 27.806     High  
cufflinks 2.192        
cufflinks 19.376     High  
cufflinks 10.181        
cufflinks 0.156       Low
cufflinks 20.941     High  
cufflinks 2.708        
cufflinks 6.944        
cufflinks 0.345       Low
cufflinks 3.112        
cufflinks 15.882     High  
cufflinks 27.769     High  
cufflinks 6.075        
cufflinks 37.696     High High
cufflinks 5.197        
cufflinks 1.707       Low
cufflinks 6.441        

0 Strain