Gene : Bradi3g27600 B. distachyon v3.1
Defline:  (1 of 1) PTHR11406//PTHR11406:SF13 - PHOSPHOGLYCERATE KINASE // SUBFAMILY NOT NAMED Genomic Order:  3278
Name:  ? Bradi3g27600 Secondary Identifier:  ? PAC:32818245
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Sequence Feature Displayer

Ontology Annotation Displayer

8 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon ANAEROFRUCAT-PWY Brachypodium distachyon pathologic  
Bdistachyon ANAGLYCOLYSIS-PWY Brachypodium distachyon pathologic  
Bdistachyon CALVIN-PWY Brachypodium distachyon pathologic  
Bdistachyon GLUCONEO-PWY Brachypodium distachyon pathologic  
Bdistachyon PHOTOALL-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-1042 Brachypodium distachyon pathologic  
Bdistachyon PWY-5464 Brachypodium distachyon pathologic  
Bdistachyon SUCSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g27600 0.5kb upstream 0.5kb upstream 10726 true Bd3: 28340781-28351506 Brachypodium distachyon
Bradi3g27600 0.5kb upstream 0.5kb upstream 500 false Bd3: 28351007-28351506 Brachypodium distachyon
Bradi3g27600 0.5kb downstream 0.5kb downstream 10726 true Bd3: 28340281-28351006 Brachypodium distachyon
Bradi3g27600 0.5kb downstream 0.5kb downstream 500 false Bd3: 28340281-28340780 Brachypodium distachyon
Bradi3g27600 1.0kb upstream 1.0kb upstream 11226 true Bd3: 28340781-28352006 Brachypodium distachyon
Bradi3g27600 1.0kb upstream 1.0kb upstream 1000 false Bd3: 28351007-28352006 Brachypodium distachyon
Bradi3g27600 1.0kb downstream 1.0kb downstream 11226 true Bd3: 28339781-28351006 Brachypodium distachyon
Bradi3g27600 1.0kb downstream 1.0kb downstream 1000 false Bd3: 28339781-28340780 Brachypodium distachyon
Bradi3g27600 2.0kb upstream 2.0kb upstream 12226 true Bd3: 28340781-28353006 Brachypodium distachyon
Bradi3g27600 2.0kb upstream 2.0kb upstream 2000 false Bd3: 28351007-28353006 Brachypodium distachyon
Bradi3g27600 2.0kb downstream 2.0kb downstream 12226 true Bd3: 28338781-28351006 Brachypodium distachyon
Bradi3g27600 2.0kb downstream 2.0kb downstream 2000 false Bd3: 28338781-28340780 Brachypodium distachyon
Bradi3g27600 5.0kb upstream 5.0kb upstream 15226 true Bd3: 28340781-28356006 Brachypodium distachyon
Bradi3g27600 5.0kb upstream 5.0kb upstream 5000 false Bd3: 28351007-28356006 Brachypodium distachyon
Bradi3g27600 5.0kb downstream 5.0kb downstream 15226 true Bd3: 28335781-28351006 Brachypodium distachyon
Bradi3g27600 5.0kb downstream 5.0kb downstream 5000 false Bd3: 28335781-28340780 Brachypodium distachyon
Bradi3g27600 10.0kb upstream 10.0kb upstream 20226 true Bd3: 28340781-28361006 Brachypodium distachyon
Bradi3g27600 10.0kb upstream 10.0kb upstream 10000 false Bd3: 28351007-28361006 Brachypodium distachyon
Bradi3g27600 10.0kb downstream 10.0kb downstream 20226 true Bd3: 28330781-28351006 Brachypodium distachyon
Bradi3g27600 10.0kb downstream 10.0kb downstream 10000 false Bd3: 28330781-28340780 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579298 5269 Grass View MSA
122048515 5273 Angiosperm View MSA
121310998 5274 Embryophyte View MSA
123425871 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.097        
cufflinks 4.952        
cufflinks 5.586       High
cufflinks 4.251        
cufflinks 1.086       Low
cufflinks 4.159        
cufflinks 4.024        
cufflinks 3.238        
cufflinks 3.672        
cufflinks 3.2        
cufflinks 4.623        
cufflinks 3.553        
cufflinks 3.174        
cufflinks 3.351        
cufflinks 1.882        
cufflinks 4.334        
cufflinks 2.509        
cufflinks 0.833       Low
cufflinks 2.028        
cufflinks 0.147       Low
cufflinks 1.322        
cufflinks 4.914        
cufflinks 3.106        
cufflinks 3.154        
cufflinks 3.909        
cufflinks 5.627       High
cufflinks 2.752        
cufflinks 4.803        
cufflinks 4.791        
cufflinks 2.536        

0 Strain