Gene : Bradi3g27750 B. distachyon v3.1
Defline:  (1 of 1) PTHR10742:SF284 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A Genomic Order:  3297
Name:  ? Bradi3g27750 Secondary Identifier:  ? PAC:32821599
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6441 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g27750 0.5kb upstream 0.5kb upstream 8819 true Bd3: 28559843-28568661 Brachypodium distachyon
Bradi3g27750 0.5kb upstream 0.5kb upstream 500 false Bd3: 28559843-28560342 Brachypodium distachyon
Bradi3g27750 0.5kb downstream 0.5kb downstream 8819 true Bd3: 28560343-28569161 Brachypodium distachyon
Bradi3g27750 0.5kb downstream 0.5kb downstream 500 false Bd3: 28568662-28569161 Brachypodium distachyon
Bradi3g27750 1.0kb upstream 1.0kb upstream 9319 true Bd3: 28559343-28568661 Brachypodium distachyon
Bradi3g27750 1.0kb upstream 1.0kb upstream 1000 false Bd3: 28559343-28560342 Brachypodium distachyon
Bradi3g27750 1.0kb downstream 1.0kb downstream 9319 true Bd3: 28560343-28569661 Brachypodium distachyon
Bradi3g27750 1.0kb downstream 1.0kb downstream 1000 false Bd3: 28568662-28569661 Brachypodium distachyon
Bradi3g27750 2.0kb upstream 2.0kb upstream 10319 true Bd3: 28558343-28568661 Brachypodium distachyon
Bradi3g27750 2.0kb upstream 2.0kb upstream 2000 false Bd3: 28558343-28560342 Brachypodium distachyon
Bradi3g27750 2.0kb downstream 2.0kb downstream 10319 true Bd3: 28560343-28570661 Brachypodium distachyon
Bradi3g27750 2.0kb downstream 2.0kb downstream 2000 false Bd3: 28568662-28570661 Brachypodium distachyon
Bradi3g27750 5.0kb upstream 5.0kb upstream 13319 true Bd3: 28555343-28568661 Brachypodium distachyon
Bradi3g27750 5.0kb upstream 5.0kb upstream 5000 false Bd3: 28555343-28560342 Brachypodium distachyon
Bradi3g27750 5.0kb downstream 5.0kb downstream 13319 true Bd3: 28560343-28573661 Brachypodium distachyon
Bradi3g27750 5.0kb downstream 5.0kb downstream 5000 false Bd3: 28568662-28573661 Brachypodium distachyon
Bradi3g27750 10.0kb upstream 10.0kb upstream 18319 true Bd3: 28550343-28568661 Brachypodium distachyon
Bradi3g27750 10.0kb upstream 10.0kb upstream 10000 false Bd3: 28550343-28560342 Brachypodium distachyon
Bradi3g27750 10.0kb downstream 10.0kb downstream 18319 true Bd3: 28560343-28578661 Brachypodium distachyon
Bradi3g27750 10.0kb downstream 10.0kb downstream 10000 false Bd3: 28568662-28578661 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124576158 5269 Grass View MSA
122046463 5273 Angiosperm View MSA
121349079 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.831        
cufflinks 4.941        
cufflinks 4.981        
cufflinks 3.402        
cufflinks 0.707       Low
cufflinks 4.244        
cufflinks 3.783        
cufflinks 3.456        
cufflinks 4.222        
cufflinks 2.176        
cufflinks 3.408        
cufflinks 5.276       High
cufflinks 3.17        
cufflinks 2.551        
cufflinks 1.978        
cufflinks 4.095        
cufflinks 1.461       Low
cufflinks 4.644        
cufflinks 2.081        
cufflinks 0.573       Low
cufflinks 2.377        
cufflinks 4.749        
cufflinks 3.419        
cufflinks 3.426        
cufflinks 3.093        
cufflinks 4.36        
cufflinks 3.486        
cufflinks 4.071        
cufflinks 4.236        
cufflinks 5.291       High

0 Strain