Gene : Bradi3g27790 B. distachyon v3.1
Defline:  (1 of 1) PTHR13107//PTHR13107:SF1 - KARYOGAMY PROTEIN KAR4-RELATED // SUBFAMILY NOT NAMED Genomic Order:  3304
Name:  ? Bradi3g27790 Secondary Identifier:  ? PAC:32818893
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g27790 0.5kb upstream 0.5kb upstream 13763 true Bd3: 28617688-28631450 Brachypodium distachyon
Bradi3g27790 0.5kb upstream 0.5kb upstream 500 false Bd3: 28617688-28618187 Brachypodium distachyon
Bradi3g27790 0.5kb downstream 0.5kb downstream 13763 true Bd3: 28618188-28631950 Brachypodium distachyon
Bradi3g27790 0.5kb downstream 0.5kb downstream 500 false Bd3: 28631451-28631950 Brachypodium distachyon
Bradi3g27790 1.0kb upstream 1.0kb upstream 14263 true Bd3: 28617188-28631450 Brachypodium distachyon
Bradi3g27790 1.0kb upstream 1.0kb upstream 1000 false Bd3: 28617188-28618187 Brachypodium distachyon
Bradi3g27790 1.0kb downstream 1.0kb downstream 14263 true Bd3: 28618188-28632450 Brachypodium distachyon
Bradi3g27790 1.0kb downstream 1.0kb downstream 1000 false Bd3: 28631451-28632450 Brachypodium distachyon
Bradi3g27790 2.0kb upstream 2.0kb upstream 15263 true Bd3: 28616188-28631450 Brachypodium distachyon
Bradi3g27790 2.0kb upstream 2.0kb upstream 2000 false Bd3: 28616188-28618187 Brachypodium distachyon
Bradi3g27790 2.0kb downstream 2.0kb downstream 15263 true Bd3: 28618188-28633450 Brachypodium distachyon
Bradi3g27790 2.0kb downstream 2.0kb downstream 2000 false Bd3: 28631451-28633450 Brachypodium distachyon
Bradi3g27790 5.0kb upstream 5.0kb upstream 18263 true Bd3: 28613188-28631450 Brachypodium distachyon
Bradi3g27790 5.0kb upstream 5.0kb upstream 5000 false Bd3: 28613188-28618187 Brachypodium distachyon
Bradi3g27790 5.0kb downstream 5.0kb downstream 18263 true Bd3: 28618188-28636450 Brachypodium distachyon
Bradi3g27790 5.0kb downstream 5.0kb downstream 5000 false Bd3: 28631451-28636450 Brachypodium distachyon
Bradi3g27790 10.0kb upstream 10.0kb upstream 23263 true Bd3: 28608188-28631450 Brachypodium distachyon
Bradi3g27790 10.0kb upstream 10.0kb upstream 10000 false Bd3: 28608188-28618187 Brachypodium distachyon
Bradi3g27790 10.0kb downstream 10.0kb downstream 23263 true Bd3: 28618188-28641450 Brachypodium distachyon
Bradi3g27790 10.0kb downstream 10.0kb downstream 10000 false Bd3: 28631451-28641450 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569913 5269 Grass View MSA
122041791 5273 Angiosperm View MSA
121349708 5274 Embryophyte View MSA
123428450 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.076        
cufflinks 1.593        
cufflinks 1.328        
cufflinks 1.198        
cufflinks 0.321       Low
cufflinks 1.325        
cufflinks 1.216        
cufflinks 1.003        
cufflinks 1.29        
cufflinks 0.744        
cufflinks 0.937        
cufflinks 1.75       High
cufflinks 0.933        
cufflinks 0.729        
cufflinks 1.116        
cufflinks 1.586        
cufflinks 0.525       Low
cufflinks 1.886       High
cufflinks 0.682        
cufflinks 0.273       Low
cufflinks 0.773        
cufflinks 1.347        
cufflinks 1.032        
cufflinks 1.114        
cufflinks 1.085        
cufflinks 1.039        
cufflinks 0.992        
cufflinks 1.184        
cufflinks 1.207        
cufflinks 1.652        

0 Strain