Gene : Bradi3g27960 B. distachyon v3.1
Defline:  (1 of 1) PTHR18919//PTHR18919:SF100 - ACETYL-COA C-ACYLTRANSFERASE // SUBFAMILY NOT NAMED Genomic Order:  3333
Name:  ? Bradi3g27960 Secondary Identifier:  ? PAC:32821270
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5136 Brachypodium distachyon pathologic  
Bdistachyon PWY-561 Brachypodium distachyon pathologic  
Bdistachyon PWY-6435 Brachypodium distachyon pathologic  
Bdistachyon PWY-735 Brachypodium distachyon pathologic  
Bdistachyon PWY-7606 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g27960 0.5kb upstream 0.5kb upstream 4296 true Bd3: 28919763-28924058 Brachypodium distachyon
Bradi3g27960 0.5kb upstream 0.5kb upstream 500 false Bd3: 28919763-28920262 Brachypodium distachyon
Bradi3g27960 0.5kb downstream 0.5kb downstream 4296 true Bd3: 28920263-28924558 Brachypodium distachyon
Bradi3g27960 0.5kb downstream 0.5kb downstream 500 false Bd3: 28924059-28924558 Brachypodium distachyon
Bradi3g27960 1.0kb upstream 1.0kb upstream 4796 true Bd3: 28919263-28924058 Brachypodium distachyon
Bradi3g27960 1.0kb upstream 1.0kb upstream 1000 false Bd3: 28919263-28920262 Brachypodium distachyon
Bradi3g27960 1.0kb downstream 1.0kb downstream 4796 true Bd3: 28920263-28925058 Brachypodium distachyon
Bradi3g27960 1.0kb downstream 1.0kb downstream 1000 false Bd3: 28924059-28925058 Brachypodium distachyon
Bradi3g27960 2.0kb upstream 2.0kb upstream 5796 true Bd3: 28918263-28924058 Brachypodium distachyon
Bradi3g27960 2.0kb upstream 2.0kb upstream 2000 false Bd3: 28918263-28920262 Brachypodium distachyon
Bradi3g27960 2.0kb downstream 2.0kb downstream 5796 true Bd3: 28920263-28926058 Brachypodium distachyon
Bradi3g27960 2.0kb downstream 2.0kb downstream 2000 false Bd3: 28924059-28926058 Brachypodium distachyon
Bradi3g27960 5.0kb upstream 5.0kb upstream 8796 true Bd3: 28915263-28924058 Brachypodium distachyon
Bradi3g27960 5.0kb upstream 5.0kb upstream 5000 false Bd3: 28915263-28920262 Brachypodium distachyon
Bradi3g27960 5.0kb downstream 5.0kb downstream 8796 true Bd3: 28920263-28929058 Brachypodium distachyon
Bradi3g27960 5.0kb downstream 5.0kb downstream 5000 false Bd3: 28924059-28929058 Brachypodium distachyon
Bradi3g27960 10.0kb upstream 10.0kb upstream 13796 true Bd3: 28910263-28924058 Brachypodium distachyon
Bradi3g27960 10.0kb upstream 10.0kb upstream 10000 false Bd3: 28910263-28920262 Brachypodium distachyon
Bradi3g27960 10.0kb downstream 10.0kb downstream 13796 true Bd3: 28920263-28934058 Brachypodium distachyon
Bradi3g27960 10.0kb downstream 10.0kb downstream 10000 false Bd3: 28924059-28934058 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577858 5269 Grass View MSA
122045703 5273 Angiosperm View MSA
121347485 5274 Embryophyte View MSA
123424542 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.651     High  
cufflinks 13.279     High  
cufflinks 14.977     High  
cufflinks 16.534     High  
cufflinks 31.9     High High
cufflinks 11.411     High  
cufflinks 11.435     High  
cufflinks 13.344     High  
cufflinks 12.955     High  
cufflinks 12.366     High  
cufflinks 7.62       Low
cufflinks 10.722     High  
cufflinks 7.278     High Low
cufflinks 6.874       Low
cufflinks 16.895     High  
cufflinks 11.859     High  
cufflinks 15.562     High  
cufflinks 26.952     High High
cufflinks 30.116     High High
cufflinks 17.922     High  
cufflinks 17.635     High  
cufflinks 11.791     High  
cufflinks 13.189     High  
cufflinks 12.775     High  
cufflinks 11.861     High  
cufflinks 15.694     High  
cufflinks 8.393       Low
cufflinks 14.498     High  
cufflinks 13.034     High  
cufflinks 13.815     High  

0 Strain