Gene : Bradi3g28340 B. distachyon v3.1
Defline:  (1 of 1) PTHR11960//PTHR11960:SF12 - EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED // EUKARYOTIC TRANSLATION INITIATION FACTOR ISOFORM 4E Genomic Order:  3392
Name:  ? Bradi3g28340 Secondary Identifier:  ? PAC:32818461
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g28340 0.5kb upstream 0.5kb upstream 4567 true Bd3: 29404009-29408575 Brachypodium distachyon
Bradi3g28340 0.5kb upstream 0.5kb upstream 500 false Bd3: 29404009-29404508 Brachypodium distachyon
Bradi3g28340 0.5kb downstream 0.5kb downstream 4567 true Bd3: 29404509-29409075 Brachypodium distachyon
Bradi3g28340 0.5kb downstream 0.5kb downstream 500 false Bd3: 29408576-29409075 Brachypodium distachyon
Bradi3g28340 1.0kb upstream 1.0kb upstream 5067 true Bd3: 29403509-29408575 Brachypodium distachyon
Bradi3g28340 1.0kb upstream 1.0kb upstream 1000 false Bd3: 29403509-29404508 Brachypodium distachyon
Bradi3g28340 1.0kb downstream 1.0kb downstream 5067 true Bd3: 29404509-29409575 Brachypodium distachyon
Bradi3g28340 1.0kb downstream 1.0kb downstream 1000 false Bd3: 29408576-29409575 Brachypodium distachyon
Bradi3g28340 2.0kb upstream 2.0kb upstream 6067 true Bd3: 29402509-29408575 Brachypodium distachyon
Bradi3g28340 2.0kb upstream 2.0kb upstream 2000 false Bd3: 29402509-29404508 Brachypodium distachyon
Bradi3g28340 2.0kb downstream 2.0kb downstream 6067 true Bd3: 29404509-29410575 Brachypodium distachyon
Bradi3g28340 2.0kb downstream 2.0kb downstream 2000 false Bd3: 29408576-29410575 Brachypodium distachyon
Bradi3g28340 5.0kb upstream 5.0kb upstream 9067 true Bd3: 29399509-29408575 Brachypodium distachyon
Bradi3g28340 5.0kb upstream 5.0kb upstream 5000 false Bd3: 29399509-29404508 Brachypodium distachyon
Bradi3g28340 5.0kb downstream 5.0kb downstream 9067 true Bd3: 29404509-29413575 Brachypodium distachyon
Bradi3g28340 5.0kb downstream 5.0kb downstream 5000 false Bd3: 29408576-29413575 Brachypodium distachyon
Bradi3g28340 10.0kb upstream 10.0kb upstream 14067 true Bd3: 29394509-29408575 Brachypodium distachyon
Bradi3g28340 10.0kb upstream 10.0kb upstream 10000 false Bd3: 29394509-29404508 Brachypodium distachyon
Bradi3g28340 10.0kb downstream 10.0kb downstream 14067 true Bd3: 29404509-29418575 Brachypodium distachyon
Bradi3g28340 10.0kb downstream 10.0kb downstream 10000 false Bd3: 29408576-29418575 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124579111 5269 Grass View MSA
122048910 5273 Angiosperm View MSA
121311166 5274 Embryophyte View MSA
123428039 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.028     High  
cufflinks 13.338     High  
cufflinks 12.509     High  
cufflinks 19.932     High  
cufflinks 22.511     High  
cufflinks 12.844     High  
cufflinks 12.038     High  
cufflinks 11.721     High  
cufflinks 12.821     High  
cufflinks 18.861     High  
cufflinks 6.873       Low
cufflinks 9.748     High Low
cufflinks 5.195       Low
cufflinks 7.443       Low
cufflinks 13.642     High  
cufflinks 12.097     High  
cufflinks 20.547     High  
cufflinks 22.06     High  
cufflinks 20.255     High  
cufflinks 46.395     High High
cufflinks 26.226     High High
cufflinks 11.594     High  
cufflinks 12.519     High  
cufflinks 13.108     High  
cufflinks 17.011     High  
cufflinks 17.242     High  
cufflinks 7.444       Low
cufflinks 15.871     High  
cufflinks 15.695     High  
cufflinks 19.081     High  

0 Strain