Gene : Bradi3g28520 B. distachyon v3.1
Defline:  (1 of 2) PTHR11766:SF0 - TYROSINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  3415
Name:  ? Bradi3g28520 Secondary Identifier:  ? PAC:32814855
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon TRNA-CHARGING-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g28520 0.5kb upstream 0.5kb upstream 2395 true Bd3: 29634700-29637094 Brachypodium distachyon
Bradi3g28520 0.5kb upstream 0.5kb upstream 500 false Bd3: 29634700-29635199 Brachypodium distachyon
Bradi3g28520 0.5kb downstream 0.5kb downstream 2395 true Bd3: 29635200-29637594 Brachypodium distachyon
Bradi3g28520 0.5kb downstream 0.5kb downstream 500 false Bd3: 29637095-29637594 Brachypodium distachyon
Bradi3g28520 1.0kb upstream 1.0kb upstream 2895 true Bd3: 29634200-29637094 Brachypodium distachyon
Bradi3g28520 1.0kb upstream 1.0kb upstream 1000 false Bd3: 29634200-29635199 Brachypodium distachyon
Bradi3g28520 1.0kb downstream 1.0kb downstream 2895 true Bd3: 29635200-29638094 Brachypodium distachyon
Bradi3g28520 1.0kb downstream 1.0kb downstream 1000 false Bd3: 29637095-29638094 Brachypodium distachyon
Bradi3g28520 2.0kb upstream 2.0kb upstream 3895 true Bd3: 29633200-29637094 Brachypodium distachyon
Bradi3g28520 2.0kb upstream 2.0kb upstream 2000 false Bd3: 29633200-29635199 Brachypodium distachyon
Bradi3g28520 2.0kb downstream 2.0kb downstream 3895 true Bd3: 29635200-29639094 Brachypodium distachyon
Bradi3g28520 2.0kb downstream 2.0kb downstream 2000 false Bd3: 29637095-29639094 Brachypodium distachyon
Bradi3g28520 5.0kb upstream 5.0kb upstream 6895 true Bd3: 29630200-29637094 Brachypodium distachyon
Bradi3g28520 5.0kb upstream 5.0kb upstream 5000 false Bd3: 29630200-29635199 Brachypodium distachyon
Bradi3g28520 5.0kb downstream 5.0kb downstream 6895 true Bd3: 29635200-29642094 Brachypodium distachyon
Bradi3g28520 5.0kb downstream 5.0kb downstream 5000 false Bd3: 29637095-29642094 Brachypodium distachyon
Bradi3g28520 10.0kb upstream 10.0kb upstream 11895 true Bd3: 29625200-29637094 Brachypodium distachyon
Bradi3g28520 10.0kb upstream 10.0kb upstream 10000 false Bd3: 29625200-29635199 Brachypodium distachyon
Bradi3g28520 10.0kb downstream 10.0kb downstream 11895 true Bd3: 29635200-29647094 Brachypodium distachyon
Bradi3g28520 10.0kb downstream 10.0kb downstream 10000 false Bd3: 29637095-29647094 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584962 5269 Grass View MSA
122042111 5273 Angiosperm View MSA
121344516 5274 Embryophyte View MSA
123424944 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.587     High  
cufflinks 30.631     High High
cufflinks 26.588     High  
cufflinks 34.216     High High
cufflinks 7.709       Low
cufflinks 22.846     High  
cufflinks 25.127     High  
cufflinks 18.802     High  
cufflinks 17.489     High  
cufflinks 21.603     High  
cufflinks 6.838       Low
cufflinks 22.367     High  
cufflinks 18.079     High  
cufflinks 10.954     High  
cufflinks 19.494     High  
cufflinks 22.896     High  
cufflinks 18.091     High  
cufflinks 4.545       Low
cufflinks 8.146        
cufflinks 3.732       Low
cufflinks 12.216     High  
cufflinks 20.505     High  
cufflinks 19.158     High  
cufflinks 21.118     High  
cufflinks 23.188     High  
cufflinks 28.507     High  
cufflinks 10.987     High  
cufflinks 25.109     High  
cufflinks 23.734     High  
cufflinks 17.115     High  

0 Strain