Gene : Bradi3g33820 B. distachyon v3.1
Defline:  (1 of 1) PTHR11801 - SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION Genomic Order:  4101
Name:  ? Bradi3g33820 Secondary Identifier:  ? PAC:32816861
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g33820 0.5kb upstream 0.5kb upstream 5449 true Bd3: 36026117-36031565 Brachypodium distachyon
Bradi3g33820 0.5kb upstream 0.5kb upstream 500 false Bd3: 36026117-36026616 Brachypodium distachyon
Bradi3g33820 0.5kb downstream 0.5kb downstream 5449 true Bd3: 36026617-36032065 Brachypodium distachyon
Bradi3g33820 0.5kb downstream 0.5kb downstream 500 false Bd3: 36031566-36032065 Brachypodium distachyon
Bradi3g33820 1.0kb upstream 1.0kb upstream 5949 true Bd3: 36025617-36031565 Brachypodium distachyon
Bradi3g33820 1.0kb upstream 1.0kb upstream 1000 false Bd3: 36025617-36026616 Brachypodium distachyon
Bradi3g33820 1.0kb downstream 1.0kb downstream 5949 true Bd3: 36026617-36032565 Brachypodium distachyon
Bradi3g33820 1.0kb downstream 1.0kb downstream 1000 false Bd3: 36031566-36032565 Brachypodium distachyon
Bradi3g33820 2.0kb upstream 2.0kb upstream 6949 true Bd3: 36024617-36031565 Brachypodium distachyon
Bradi3g33820 2.0kb upstream 2.0kb upstream 2000 false Bd3: 36024617-36026616 Brachypodium distachyon
Bradi3g33820 2.0kb downstream 2.0kb downstream 6949 true Bd3: 36026617-36033565 Brachypodium distachyon
Bradi3g33820 2.0kb downstream 2.0kb downstream 2000 false Bd3: 36031566-36033565 Brachypodium distachyon
Bradi3g33820 5.0kb upstream 5.0kb upstream 9949 true Bd3: 36021617-36031565 Brachypodium distachyon
Bradi3g33820 5.0kb upstream 5.0kb upstream 5000 false Bd3: 36021617-36026616 Brachypodium distachyon
Bradi3g33820 5.0kb downstream 5.0kb downstream 9949 true Bd3: 36026617-36036565 Brachypodium distachyon
Bradi3g33820 5.0kb downstream 5.0kb downstream 5000 false Bd3: 36031566-36036565 Brachypodium distachyon
Bradi3g33820 10.0kb upstream 10.0kb upstream 14949 true Bd3: 36016617-36031565 Brachypodium distachyon
Bradi3g33820 10.0kb upstream 10.0kb upstream 10000 false Bd3: 36016617-36026616 Brachypodium distachyon
Bradi3g33820 10.0kb downstream 10.0kb downstream 14949 true Bd3: 36026617-36041565 Brachypodium distachyon
Bradi3g33820 10.0kb downstream 10.0kb downstream 10000 false Bd3: 36031566-36041565 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586826 5269 Grass View MSA
122044134 5273 Angiosperm View MSA
121347247 5274 Embryophyte View MSA
123380519 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.926       Low
cufflinks 2.205        
cufflinks 2.479       High
cufflinks 2.061        
cufflinks 0.615       Low
cufflinks 1.755        
cufflinks 1.787        
cufflinks 1.851        
cufflinks 1.99        
cufflinks 1.42        
cufflinks 2.268        
cufflinks 1.452        
cufflinks 1.541        
cufflinks 1.678        
cufflinks 1.029        
cufflinks 1.565        
cufflinks 0.957       Low
cufflinks 1.876        
cufflinks 1.026        
cufflinks 0.604       Low
cufflinks 1.905        
cufflinks 2.008        
cufflinks 2.079        
cufflinks 1.671        
cufflinks 1.817        
cufflinks 2.249        
cufflinks 2.409        
cufflinks 2.347        
cufflinks 2.178        
cufflinks 1.764        

0 Strain