Gene : Bradi3g34240 B. distachyon v3.1
Defline:  (1 of 1) PTHR10694:SF33 - TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN Genomic Order:  4162
Name:  ? Bradi3g34240 Secondary Identifier:  ? PAC:32819952
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g34240 0.5kb upstream 0.5kb upstream 6414 true Bd3: 36414899-36421312 Brachypodium distachyon
Bradi3g34240 0.5kb upstream 0.5kb upstream 500 false Bd3: 36414899-36415398 Brachypodium distachyon
Bradi3g34240 0.5kb downstream 0.5kb downstream 6414 true Bd3: 36415399-36421812 Brachypodium distachyon
Bradi3g34240 0.5kb downstream 0.5kb downstream 500 false Bd3: 36421313-36421812 Brachypodium distachyon
Bradi3g34240 1.0kb upstream 1.0kb upstream 6914 true Bd3: 36414399-36421312 Brachypodium distachyon
Bradi3g34240 1.0kb upstream 1.0kb upstream 1000 false Bd3: 36414399-36415398 Brachypodium distachyon
Bradi3g34240 1.0kb downstream 1.0kb downstream 6914 true Bd3: 36415399-36422312 Brachypodium distachyon
Bradi3g34240 1.0kb downstream 1.0kb downstream 1000 false Bd3: 36421313-36422312 Brachypodium distachyon
Bradi3g34240 2.0kb upstream 2.0kb upstream 7914 true Bd3: 36413399-36421312 Brachypodium distachyon
Bradi3g34240 2.0kb upstream 2.0kb upstream 2000 false Bd3: 36413399-36415398 Brachypodium distachyon
Bradi3g34240 2.0kb downstream 2.0kb downstream 7914 true Bd3: 36415399-36423312 Brachypodium distachyon
Bradi3g34240 2.0kb downstream 2.0kb downstream 2000 false Bd3: 36421313-36423312 Brachypodium distachyon
Bradi3g34240 5.0kb upstream 5.0kb upstream 10914 true Bd3: 36410399-36421312 Brachypodium distachyon
Bradi3g34240 5.0kb upstream 5.0kb upstream 5000 false Bd3: 36410399-36415398 Brachypodium distachyon
Bradi3g34240 5.0kb downstream 5.0kb downstream 10914 true Bd3: 36415399-36426312 Brachypodium distachyon
Bradi3g34240 5.0kb downstream 5.0kb downstream 5000 false Bd3: 36421313-36426312 Brachypodium distachyon
Bradi3g34240 10.0kb upstream 10.0kb upstream 15914 true Bd3: 36405399-36421312 Brachypodium distachyon
Bradi3g34240 10.0kb upstream 10.0kb upstream 10000 false Bd3: 36405399-36415398 Brachypodium distachyon
Bradi3g34240 10.0kb downstream 10.0kb downstream 15914 true Bd3: 36415399-36431312 Brachypodium distachyon
Bradi3g34240 10.0kb downstream 10.0kb downstream 10000 false Bd3: 36421313-36431312 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577969 5269 Grass View MSA
122042889 5273 Angiosperm View MSA
123428928 5275 Viridiplantae View MSA
121310039 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.879        
cufflinks 2.67        
cufflinks 2.775        
cufflinks 1.914        
cufflinks 4.032       High
cufflinks 2.206        
cufflinks 2.041        
cufflinks 2.406        
cufflinks 2.396        
cufflinks 2.077        
cufflinks 5.662       High
cufflinks 4.521       High
cufflinks 3.313        
cufflinks 2.656        
cufflinks 4.743       High
cufflinks 3.337        
cufflinks 1.27       Low
cufflinks 3.421        
cufflinks 2.54        
cufflinks 1.625        
cufflinks 0.778       Low
cufflinks 3.683       High
cufflinks 2.056        
cufflinks 2.036        
cufflinks 1.614        
cufflinks 2.638        
cufflinks 1.206       Low
cufflinks 2.388        
cufflinks 2.636        
cufflinks 3.053        

0 Strain