Gene : Bradi3g30830 B. distachyon v3.1
Defline:  (1 of 2) PTHR12358//PTHR12358:SF39 - SPHINGOSINE KINASE // SUBFAMILY NOT NAMED Genomic Order:  3744
Name:  ? Bradi3g30830 Secondary Identifier:  ? PAC:32816452
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5129 Brachypodium distachyon pathologic  
Bdistachyon PWY-6483 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g30830 0.5kb upstream 0.5kb upstream 9356 true Bd3: 32817284-32826639 Brachypodium distachyon
Bradi3g30830 0.5kb upstream 0.5kb upstream 500 false Bd3: 32817284-32817783 Brachypodium distachyon
Bradi3g30830 0.5kb downstream 0.5kb downstream 9356 true Bd3: 32817784-32827139 Brachypodium distachyon
Bradi3g30830 0.5kb downstream 0.5kb downstream 500 false Bd3: 32826640-32827139 Brachypodium distachyon
Bradi3g30830 1.0kb upstream 1.0kb upstream 9856 true Bd3: 32816784-32826639 Brachypodium distachyon
Bradi3g30830 1.0kb upstream 1.0kb upstream 1000 false Bd3: 32816784-32817783 Brachypodium distachyon
Bradi3g30830 1.0kb downstream 1.0kb downstream 9856 true Bd3: 32817784-32827639 Brachypodium distachyon
Bradi3g30830 1.0kb downstream 1.0kb downstream 1000 false Bd3: 32826640-32827639 Brachypodium distachyon
Bradi3g30830 2.0kb upstream 2.0kb upstream 10856 true Bd3: 32815784-32826639 Brachypodium distachyon
Bradi3g30830 2.0kb upstream 2.0kb upstream 2000 false Bd3: 32815784-32817783 Brachypodium distachyon
Bradi3g30830 2.0kb downstream 2.0kb downstream 10856 true Bd3: 32817784-32828639 Brachypodium distachyon
Bradi3g30830 2.0kb downstream 2.0kb downstream 2000 false Bd3: 32826640-32828639 Brachypodium distachyon
Bradi3g30830 5.0kb upstream 5.0kb upstream 13856 true Bd3: 32812784-32826639 Brachypodium distachyon
Bradi3g30830 5.0kb upstream 5.0kb upstream 5000 false Bd3: 32812784-32817783 Brachypodium distachyon
Bradi3g30830 5.0kb downstream 5.0kb downstream 13856 true Bd3: 32817784-32831639 Brachypodium distachyon
Bradi3g30830 5.0kb downstream 5.0kb downstream 5000 false Bd3: 32826640-32831639 Brachypodium distachyon
Bradi3g30830 10.0kb upstream 10.0kb upstream 18856 true Bd3: 32807784-32826639 Brachypodium distachyon
Bradi3g30830 10.0kb upstream 10.0kb upstream 10000 false Bd3: 32807784-32817783 Brachypodium distachyon
Bradi3g30830 10.0kb downstream 10.0kb downstream 18856 true Bd3: 32817784-32836639 Brachypodium distachyon
Bradi3g30830 10.0kb downstream 10.0kb downstream 10000 false Bd3: 32826640-32836639 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577757 5269 Grass View MSA
122046814 5273 Angiosperm View MSA
121349004 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.297        
cufflinks 1.799        
cufflinks 2.112        
cufflinks 1.35        
cufflinks 0.733       Low
cufflinks 1.641        
cufflinks 1.513        
cufflinks 1.557        
cufflinks 1.626        
cufflinks 1.175        
cufflinks 1.557        
cufflinks 2.093        
cufflinks 1.868        
cufflinks 1.318        
cufflinks 1.682        
cufflinks 1.801        
cufflinks 1.197        
cufflinks 2.636       High
cufflinks 1.284        
cufflinks 0.266       Low
cufflinks 2.349        
cufflinks 2.26        
cufflinks 1.558        
cufflinks 1.638        
cufflinks 1.291        
cufflinks 1.818        
cufflinks 1.602        
cufflinks 1.649        
cufflinks 1.751        
cufflinks 2.81       High

0 Strain