Gene : Bradi3g38240 B. distachyon v3.1
Defline:  (1 of 2) PTHR13087 - NF-KAPPA B ACTIVATING PROTEIN Genomic Order:  4710
Name:  ? Bradi3g38240 Secondary Identifier:  ? PAC:32819966
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g38240 0.5kb upstream 0.5kb upstream 1736 true Bd3: 40522837-40524572 Brachypodium distachyon
Bradi3g38240 0.5kb upstream 0.5kb upstream 500 false Bd3: 40524073-40524572 Brachypodium distachyon
Bradi3g38240 0.5kb downstream 0.5kb downstream 1736 true Bd3: 40522337-40524072 Brachypodium distachyon
Bradi3g38240 0.5kb downstream 0.5kb downstream 500 false Bd3: 40522337-40522836 Brachypodium distachyon
Bradi3g38240 1.0kb upstream 1.0kb upstream 2236 true Bd3: 40522837-40525072 Brachypodium distachyon
Bradi3g38240 1.0kb upstream 1.0kb upstream 1000 false Bd3: 40524073-40525072 Brachypodium distachyon
Bradi3g38240 1.0kb downstream 1.0kb downstream 2236 true Bd3: 40521837-40524072 Brachypodium distachyon
Bradi3g38240 1.0kb downstream 1.0kb downstream 1000 false Bd3: 40521837-40522836 Brachypodium distachyon
Bradi3g38240 2.0kb upstream 2.0kb upstream 3236 true Bd3: 40522837-40526072 Brachypodium distachyon
Bradi3g38240 2.0kb upstream 2.0kb upstream 2000 false Bd3: 40524073-40526072 Brachypodium distachyon
Bradi3g38240 2.0kb downstream 2.0kb downstream 3236 true Bd3: 40520837-40524072 Brachypodium distachyon
Bradi3g38240 2.0kb downstream 2.0kb downstream 2000 false Bd3: 40520837-40522836 Brachypodium distachyon
Bradi3g38240 5.0kb upstream 5.0kb upstream 6236 true Bd3: 40522837-40529072 Brachypodium distachyon
Bradi3g38240 5.0kb upstream 5.0kb upstream 5000 false Bd3: 40524073-40529072 Brachypodium distachyon
Bradi3g38240 5.0kb downstream 5.0kb downstream 6236 true Bd3: 40517837-40524072 Brachypodium distachyon
Bradi3g38240 5.0kb downstream 5.0kb downstream 5000 false Bd3: 40517837-40522836 Brachypodium distachyon
Bradi3g38240 10.0kb upstream 10.0kb upstream 11236 true Bd3: 40522837-40534072 Brachypodium distachyon
Bradi3g38240 10.0kb upstream 10.0kb upstream 10000 false Bd3: 40524073-40534072 Brachypodium distachyon
Bradi3g38240 10.0kb downstream 10.0kb downstream 11236 true Bd3: 40512837-40524072 Brachypodium distachyon
Bradi3g38240 10.0kb downstream 10.0kb downstream 10000 false Bd3: 40512837-40522836 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584410 5269 Grass View MSA
122046016 5273 Angiosperm View MSA
121348345 5274 Embryophyte View MSA
123426799 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.066     Low Low
cufflinks 0.149        
cufflinks 0.102        
cufflinks 0.173        
cufflinks 0.145        
cufflinks 0.123        
cufflinks 0.066     Low Low
cufflinks 0.07     Low  
cufflinks 0.102     Low  
cufflinks 0.267       High
cufflinks 0.08        
cufflinks 0.066     Low Low
cufflinks 0.106        
cufflinks 0.129        
cufflinks 0.075     Low  
cufflinks 0.074     Low  
cufflinks 0.035     Low Low
cufflinks 0.054     Low Low
cufflinks 0.322       High
cufflinks 0.398       High
cufflinks 0.488       High
cufflinks 0.203        
cufflinks 0.209        
cufflinks 0.155        
cufflinks 0.09     Low  
cufflinks 0.107     Low  
cufflinks 0.243        
cufflinks 0.163        
cufflinks 0.12        
cufflinks 0.289       High

0 Strain