Gene : Bradi3g38390 B. distachyon v3.1
Defline:  (1 of 1) PTHR12700//PTHR12700:SF12 - FAMILY NOT NAMED // ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL Genomic Order:  4728
Name:  ? Bradi3g38390 Secondary Identifier:  ? PAC:32819139
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g38390 0.5kb upstream 0.5kb upstream 4484 true Bd3: 40650805-40655288 Brachypodium distachyon
Bradi3g38390 0.5kb upstream 0.5kb upstream 500 false Bd3: 40654789-40655288 Brachypodium distachyon
Bradi3g38390 0.5kb downstream 0.5kb downstream 4484 true Bd3: 40650305-40654788 Brachypodium distachyon
Bradi3g38390 0.5kb downstream 0.5kb downstream 500 false Bd3: 40650305-40650804 Brachypodium distachyon
Bradi3g38390 1.0kb upstream 1.0kb upstream 4984 true Bd3: 40650805-40655788 Brachypodium distachyon
Bradi3g38390 1.0kb upstream 1.0kb upstream 1000 false Bd3: 40654789-40655788 Brachypodium distachyon
Bradi3g38390 1.0kb downstream 1.0kb downstream 4984 true Bd3: 40649805-40654788 Brachypodium distachyon
Bradi3g38390 1.0kb downstream 1.0kb downstream 1000 false Bd3: 40649805-40650804 Brachypodium distachyon
Bradi3g38390 2.0kb upstream 2.0kb upstream 5984 true Bd3: 40650805-40656788 Brachypodium distachyon
Bradi3g38390 2.0kb upstream 2.0kb upstream 2000 false Bd3: 40654789-40656788 Brachypodium distachyon
Bradi3g38390 2.0kb downstream 2.0kb downstream 5984 true Bd3: 40648805-40654788 Brachypodium distachyon
Bradi3g38390 2.0kb downstream 2.0kb downstream 2000 false Bd3: 40648805-40650804 Brachypodium distachyon
Bradi3g38390 5.0kb upstream 5.0kb upstream 8984 true Bd3: 40650805-40659788 Brachypodium distachyon
Bradi3g38390 5.0kb upstream 5.0kb upstream 5000 false Bd3: 40654789-40659788 Brachypodium distachyon
Bradi3g38390 5.0kb downstream 5.0kb downstream 8984 true Bd3: 40645805-40654788 Brachypodium distachyon
Bradi3g38390 5.0kb downstream 5.0kb downstream 5000 false Bd3: 40645805-40650804 Brachypodium distachyon
Bradi3g38390 10.0kb upstream 10.0kb upstream 13984 true Bd3: 40650805-40664788 Brachypodium distachyon
Bradi3g38390 10.0kb upstream 10.0kb upstream 10000 false Bd3: 40654789-40664788 Brachypodium distachyon
Bradi3g38390 10.0kb downstream 10.0kb downstream 13984 true Bd3: 40640805-40654788 Brachypodium distachyon
Bradi3g38390 10.0kb downstream 10.0kb downstream 10000 false Bd3: 40640805-40650804 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124585577 5269 Grass View MSA
122044674 5273 Angiosperm View MSA
121348780 5274 Embryophyte View MSA
123427707 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 46.177     High  
cufflinks 28.226     High  
cufflinks 29.298     High  
cufflinks 38.136     High  
cufflinks 52.591     High  
cufflinks 26.166     High  
cufflinks 26.354     High  
cufflinks 26.319     High  
cufflinks 26.428     High  
cufflinks 50.016     High  
cufflinks 15.049     High Low
cufflinks 28.591     High  
cufflinks 17.225     High Low
cufflinks 17.122     High Low
cufflinks 45.097     High  
cufflinks 24.966     High  
cufflinks 63.53     High High
cufflinks 38.426     High  
cufflinks 59.832     High High
cufflinks 57.452     High High
cufflinks 77.583     High High
cufflinks 29.319     High  
cufflinks 28.698     High  
cufflinks 29.026     High  
cufflinks 34.851     High  
cufflinks 43.392     High  
cufflinks 18.772     High Low
cufflinks 40.915     High  
cufflinks 35.576     High  
cufflinks 57.461     High High

0 Strain