Gene : Bradi3g38655 B. distachyon v3.1
Defline:  (1 of 2) PTHR22808 - NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING Genomic Order:  4764
Name:  ? Bradi3g38655 Secondary Identifier:  ? PAC:32821996
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6829 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g38655 0.5kb upstream 0.5kb upstream 15252 true Bd3: 40896497-40911748 Brachypodium distachyon
Bradi3g38655 0.5kb upstream 0.5kb upstream 500 false Bd3: 40911249-40911748 Brachypodium distachyon
Bradi3g38655 0.5kb downstream 0.5kb downstream 15252 true Bd3: 40895997-40911248 Brachypodium distachyon
Bradi3g38655 0.5kb downstream 0.5kb downstream 500 false Bd3: 40895997-40896496 Brachypodium distachyon
Bradi3g38655 1.0kb upstream 1.0kb upstream 15752 true Bd3: 40896497-40912248 Brachypodium distachyon
Bradi3g38655 1.0kb upstream 1.0kb upstream 1000 false Bd3: 40911249-40912248 Brachypodium distachyon
Bradi3g38655 1.0kb downstream 1.0kb downstream 15752 true Bd3: 40895497-40911248 Brachypodium distachyon
Bradi3g38655 1.0kb downstream 1.0kb downstream 1000 false Bd3: 40895497-40896496 Brachypodium distachyon
Bradi3g38655 2.0kb upstream 2.0kb upstream 16752 true Bd3: 40896497-40913248 Brachypodium distachyon
Bradi3g38655 2.0kb upstream 2.0kb upstream 2000 false Bd3: 40911249-40913248 Brachypodium distachyon
Bradi3g38655 2.0kb downstream 2.0kb downstream 16752 true Bd3: 40894497-40911248 Brachypodium distachyon
Bradi3g38655 2.0kb downstream 2.0kb downstream 2000 false Bd3: 40894497-40896496 Brachypodium distachyon
Bradi3g38655 5.0kb upstream 5.0kb upstream 19752 true Bd3: 40896497-40916248 Brachypodium distachyon
Bradi3g38655 5.0kb upstream 5.0kb upstream 5000 false Bd3: 40911249-40916248 Brachypodium distachyon
Bradi3g38655 5.0kb downstream 5.0kb downstream 19752 true Bd3: 40891497-40911248 Brachypodium distachyon
Bradi3g38655 5.0kb downstream 5.0kb downstream 5000 false Bd3: 40891497-40896496 Brachypodium distachyon
Bradi3g38655 10.0kb upstream 10.0kb upstream 24752 true Bd3: 40896497-40921248 Brachypodium distachyon
Bradi3g38655 10.0kb upstream 10.0kb upstream 10000 false Bd3: 40911249-40921248 Brachypodium distachyon
Bradi3g38655 10.0kb downstream 10.0kb downstream 24752 true Bd3: 40886497-40911248 Brachypodium distachyon
Bradi3g38655 10.0kb downstream 10.0kb downstream 10000 false Bd3: 40886497-40896496 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124584672 5269 Grass View MSA
122043899 5273 Angiosperm View MSA
121349940 5274 Embryophyte View MSA
123426394 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.051     Low  
cufflinks 0.211       High
cufflinks 0.139        
cufflinks 0.174       High
cufflinks 0.027     Low  
cufflinks 0.111        
cufflinks 0.153       High
cufflinks 0.065     Low  
cufflinks 0.072     Low  
cufflinks 0.062     Low  
cufflinks 0.046     Low  
cufflinks 0.093        
cufflinks 0.031     Low  
cufflinks 0.031     Low  
cufflinks 0.024     Low Low
cufflinks 0.104        
cufflinks 0.063     Low  
cufflinks 0.044     Low  
cufflinks 0.058     Low  
cufflinks 0.012     Low Low
cufflinks 0.065     Low  
cufflinks 0.11     Low  
cufflinks 0.062     Low  
cufflinks 0.071     Low  
cufflinks 0.12        
cufflinks 0.124        
cufflinks 0.028     Low  
cufflinks 0.085     Low  
cufflinks 0.097     Low  
cufflinks 0.126        

0 Strain