Gene : Bradi3g39380 B. distachyon v3.1
Defline:  (1 of 1) PTHR10509//PTHR10509:SF28 - O-METHYLTRANSFERASE-RELATED // SUBFAMILY NOT NAMED Genomic Order:  4846
Name:  ? Bradi3g39380 Secondary Identifier:  ? PAC:32812568
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-1121 Brachypodium distachyon pathologic  
Bdistachyon PWY-361 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g39380 0.5kb upstream 0.5kb upstream 6618 true Bd3: 41435755-41442372 Brachypodium distachyon
Bradi3g39380 0.5kb upstream 0.5kb upstream 500 false Bd3: 41441873-41442372 Brachypodium distachyon
Bradi3g39380 0.5kb downstream 0.5kb downstream 6618 true Bd3: 41435255-41441872 Brachypodium distachyon
Bradi3g39380 0.5kb downstream 0.5kb downstream 500 false Bd3: 41435255-41435754 Brachypodium distachyon
Bradi3g39380 1.0kb upstream 1.0kb upstream 7118 true Bd3: 41435755-41442872 Brachypodium distachyon
Bradi3g39380 1.0kb upstream 1.0kb upstream 1000 false Bd3: 41441873-41442872 Brachypodium distachyon
Bradi3g39380 1.0kb downstream 1.0kb downstream 7118 true Bd3: 41434755-41441872 Brachypodium distachyon
Bradi3g39380 1.0kb downstream 1.0kb downstream 1000 false Bd3: 41434755-41435754 Brachypodium distachyon
Bradi3g39380 2.0kb upstream 2.0kb upstream 8118 true Bd3: 41435755-41443872 Brachypodium distachyon
Bradi3g39380 2.0kb upstream 2.0kb upstream 2000 false Bd3: 41441873-41443872 Brachypodium distachyon
Bradi3g39380 2.0kb downstream 2.0kb downstream 8118 true Bd3: 41433755-41441872 Brachypodium distachyon
Bradi3g39380 2.0kb downstream 2.0kb downstream 2000 false Bd3: 41433755-41435754 Brachypodium distachyon
Bradi3g39380 5.0kb upstream 5.0kb upstream 11118 true Bd3: 41435755-41446872 Brachypodium distachyon
Bradi3g39380 5.0kb upstream 5.0kb upstream 5000 false Bd3: 41441873-41446872 Brachypodium distachyon
Bradi3g39380 5.0kb downstream 5.0kb downstream 11118 true Bd3: 41430755-41441872 Brachypodium distachyon
Bradi3g39380 5.0kb downstream 5.0kb downstream 5000 false Bd3: 41430755-41435754 Brachypodium distachyon
Bradi3g39380 10.0kb upstream 10.0kb upstream 16118 true Bd3: 41435755-41451872 Brachypodium distachyon
Bradi3g39380 10.0kb upstream 10.0kb upstream 10000 false Bd3: 41441873-41451872 Brachypodium distachyon
Bradi3g39380 10.0kb downstream 10.0kb downstream 16118 true Bd3: 41425755-41441872 Brachypodium distachyon
Bradi3g39380 10.0kb downstream 10.0kb downstream 10000 false Bd3: 41425755-41435754 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589237 5269 Grass View MSA
122043643 5273 Angiosperm View MSA
121346702 5274 Embryophyte View MSA
123427843 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.92        
cufflinks 1.108        
cufflinks 0.651        
cufflinks 1.635        
cufflinks 0.484       Low
cufflinks 1.576        
cufflinks 1.661        
cufflinks 1.776        
cufflinks 1.927        
cufflinks 1.195        
cufflinks 0.305       Low
cufflinks 0.589        
cufflinks 0.644        
cufflinks 0.365       Low
cufflinks 1.266        
cufflinks 0.536       Low
cufflinks 1.771        
cufflinks 0.811        
cufflinks 1.72        
cufflinks 0.888        
cufflinks 9.076       High
cufflinks 0.69        
cufflinks 1.94        
cufflinks 1.782        
cufflinks 2.666       High
cufflinks 0.833        
cufflinks 0.492       Low
cufflinks 1.189        
cufflinks 1.06        
cufflinks 2.235        

0 Strain