Gene : Bradi3g39500 B. distachyon v3.1
Defline:  (1 of 1) PTHR10540:SF8 - COP9 SIGNALOSOME COMPLEX SUBUNIT 6 Genomic Order:  4858
Name:  ? Bradi3g39500 Secondary Identifier:  ? PAC:32821327
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g39500 0.5kb upstream 0.5kb upstream 5403 true Bd3: 41513299-41518701 Brachypodium distachyon
Bradi3g39500 0.5kb upstream 0.5kb upstream 500 false Bd3: 41518202-41518701 Brachypodium distachyon
Bradi3g39500 0.5kb downstream 0.5kb downstream 5403 true Bd3: 41512799-41518201 Brachypodium distachyon
Bradi3g39500 0.5kb downstream 0.5kb downstream 500 false Bd3: 41512799-41513298 Brachypodium distachyon
Bradi3g39500 1.0kb upstream 1.0kb upstream 5903 true Bd3: 41513299-41519201 Brachypodium distachyon
Bradi3g39500 1.0kb upstream 1.0kb upstream 1000 false Bd3: 41518202-41519201 Brachypodium distachyon
Bradi3g39500 1.0kb downstream 1.0kb downstream 5903 true Bd3: 41512299-41518201 Brachypodium distachyon
Bradi3g39500 1.0kb downstream 1.0kb downstream 1000 false Bd3: 41512299-41513298 Brachypodium distachyon
Bradi3g39500 2.0kb upstream 2.0kb upstream 6903 true Bd3: 41513299-41520201 Brachypodium distachyon
Bradi3g39500 2.0kb upstream 2.0kb upstream 2000 false Bd3: 41518202-41520201 Brachypodium distachyon
Bradi3g39500 2.0kb downstream 2.0kb downstream 6903 true Bd3: 41511299-41518201 Brachypodium distachyon
Bradi3g39500 2.0kb downstream 2.0kb downstream 2000 false Bd3: 41511299-41513298 Brachypodium distachyon
Bradi3g39500 5.0kb upstream 5.0kb upstream 9903 true Bd3: 41513299-41523201 Brachypodium distachyon
Bradi3g39500 5.0kb upstream 5.0kb upstream 5000 false Bd3: 41518202-41523201 Brachypodium distachyon
Bradi3g39500 5.0kb downstream 5.0kb downstream 9903 true Bd3: 41508299-41518201 Brachypodium distachyon
Bradi3g39500 5.0kb downstream 5.0kb downstream 5000 false Bd3: 41508299-41513298 Brachypodium distachyon
Bradi3g39500 10.0kb upstream 10.0kb upstream 14903 true Bd3: 41513299-41528201 Brachypodium distachyon
Bradi3g39500 10.0kb upstream 10.0kb upstream 10000 false Bd3: 41518202-41528201 Brachypodium distachyon
Bradi3g39500 10.0kb downstream 10.0kb downstream 14903 true Bd3: 41503299-41518201 Brachypodium distachyon
Bradi3g39500 10.0kb downstream 10.0kb downstream 10000 false Bd3: 41503299-41513298 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124578831 5269 Grass View MSA
122050330 5273 Angiosperm View MSA
121345331 5274 Embryophyte View MSA
123424156 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.831        
cufflinks 3.607        
cufflinks 3.092        
cufflinks 2.962        
cufflinks 2.222        
cufflinks 3.507        
cufflinks 3.782        
cufflinks 3.176        
cufflinks 3.38        
cufflinks 3.209        
cufflinks 2.188        
cufflinks 2.504        
cufflinks 1.743       Low
cufflinks 1.884       Low
cufflinks 1.837       Low
cufflinks 3.35        
cufflinks 4.204        
cufflinks 5.479       High
cufflinks 6.261       High
cufflinks 3.151        
cufflinks 4.644       High
cufflinks 3.244        
cufflinks 2.827        
cufflinks 3.136        
cufflinks 3.5        
cufflinks 3.091        
cufflinks 2.503        
cufflinks 3.09        
cufflinks 3.067        
cufflinks 3.733        

0 Strain