Gene : Bradi3g39640 B. distachyon v3.1
Defline:  (1 of 2) 2.1.2.2 - Phosphoribosylglycinamide formyltransferase / Glycinamide ribonucleotide transformylase Genomic Order:  4877
Name:  ? Bradi3g39640 Secondary Identifier:  ? PAC:32815219
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6121 Brachypodium distachyon pathologic  
Bdistachyon PWY-6613 Brachypodium distachyon pathologic  
Bdistachyon PWY-841 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g39640 0.5kb upstream 0.5kb upstream 5784 true Bd3: 41616913-41622696 Brachypodium distachyon
Bradi3g39640 0.5kb upstream 0.5kb upstream 500 false Bd3: 41616913-41617412 Brachypodium distachyon
Bradi3g39640 0.5kb downstream 0.5kb downstream 5784 true Bd3: 41617413-41623196 Brachypodium distachyon
Bradi3g39640 0.5kb downstream 0.5kb downstream 500 false Bd3: 41622697-41623196 Brachypodium distachyon
Bradi3g39640 1.0kb upstream 1.0kb upstream 6284 true Bd3: 41616413-41622696 Brachypodium distachyon
Bradi3g39640 1.0kb upstream 1.0kb upstream 1000 false Bd3: 41616413-41617412 Brachypodium distachyon
Bradi3g39640 1.0kb downstream 1.0kb downstream 6284 true Bd3: 41617413-41623696 Brachypodium distachyon
Bradi3g39640 1.0kb downstream 1.0kb downstream 1000 false Bd3: 41622697-41623696 Brachypodium distachyon
Bradi3g39640 2.0kb upstream 2.0kb upstream 7284 true Bd3: 41615413-41622696 Brachypodium distachyon
Bradi3g39640 2.0kb upstream 2.0kb upstream 2000 false Bd3: 41615413-41617412 Brachypodium distachyon
Bradi3g39640 2.0kb downstream 2.0kb downstream 7284 true Bd3: 41617413-41624696 Brachypodium distachyon
Bradi3g39640 2.0kb downstream 2.0kb downstream 2000 false Bd3: 41622697-41624696 Brachypodium distachyon
Bradi3g39640 5.0kb upstream 5.0kb upstream 10284 true Bd3: 41612413-41622696 Brachypodium distachyon
Bradi3g39640 5.0kb upstream 5.0kb upstream 5000 false Bd3: 41612413-41617412 Brachypodium distachyon
Bradi3g39640 5.0kb downstream 5.0kb downstream 10284 true Bd3: 41617413-41627696 Brachypodium distachyon
Bradi3g39640 5.0kb downstream 5.0kb downstream 5000 false Bd3: 41622697-41627696 Brachypodium distachyon
Bradi3g39640 10.0kb upstream 10.0kb upstream 15284 true Bd3: 41607413-41622696 Brachypodium distachyon
Bradi3g39640 10.0kb upstream 10.0kb upstream 10000 false Bd3: 41607413-41617412 Brachypodium distachyon
Bradi3g39640 10.0kb downstream 10.0kb downstream 15284 true Bd3: 41617413-41632696 Brachypodium distachyon
Bradi3g39640 10.0kb downstream 10.0kb downstream 10000 false Bd3: 41622697-41632696 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124585048 5269 Grass View MSA
122049914 5273 Angiosperm View MSA
121349551 5274 Embryophyte View MSA
123426469 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.153       High
cufflinks 1.543        
cufflinks 1.831        
cufflinks 1.512        
cufflinks 0.905       Low
cufflinks 1.269        
cufflinks 1.416        
cufflinks 1.413        
cufflinks 1.436        
cufflinks 1.622        
cufflinks 1.184        
cufflinks 1.076        
cufflinks 0.724       Low
cufflinks 1.184        
cufflinks 1.182        
cufflinks 1.367        
cufflinks 1.711        
cufflinks 2.25       High
cufflinks 1.7        
cufflinks 0.84       Low
cufflinks 1.938       High
cufflinks 1.629        
cufflinks 1.269        
cufflinks 1.251        
cufflinks 1.316        
cufflinks 2.143       High
cufflinks 1.389        
cufflinks 2.09       High
cufflinks 1.88       High
cufflinks 1.225        

0 Strain