Gene : Bradi3g36120 B. distachyon v3.1
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  4417
Name:  ? Bradi3g36120 Secondary Identifier:  ? PAC:32814688
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon CAROTENOID-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-5943 Brachypodium distachyon pathologic  
Bdistachyon PWY-5947 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g36120 0.5kb upstream 0.5kb upstream 8245 true Bd3: 38124557-38132801 Brachypodium distachyon
Bradi3g36120 0.5kb upstream 0.5kb upstream 500 false Bd3: 38124557-38125056 Brachypodium distachyon
Bradi3g36120 0.5kb downstream 0.5kb downstream 8245 true Bd3: 38125057-38133301 Brachypodium distachyon
Bradi3g36120 0.5kb downstream 0.5kb downstream 500 false Bd3: 38132802-38133301 Brachypodium distachyon
Bradi3g36120 1.0kb upstream 1.0kb upstream 8745 true Bd3: 38124057-38132801 Brachypodium distachyon
Bradi3g36120 1.0kb upstream 1.0kb upstream 1000 false Bd3: 38124057-38125056 Brachypodium distachyon
Bradi3g36120 1.0kb downstream 1.0kb downstream 8745 true Bd3: 38125057-38133801 Brachypodium distachyon
Bradi3g36120 1.0kb downstream 1.0kb downstream 1000 false Bd3: 38132802-38133801 Brachypodium distachyon
Bradi3g36120 2.0kb upstream 2.0kb upstream 9745 true Bd3: 38123057-38132801 Brachypodium distachyon
Bradi3g36120 2.0kb upstream 2.0kb upstream 2000 false Bd3: 38123057-38125056 Brachypodium distachyon
Bradi3g36120 2.0kb downstream 2.0kb downstream 9745 true Bd3: 38125057-38134801 Brachypodium distachyon
Bradi3g36120 2.0kb downstream 2.0kb downstream 2000 false Bd3: 38132802-38134801 Brachypodium distachyon
Bradi3g36120 5.0kb upstream 5.0kb upstream 12745 true Bd3: 38120057-38132801 Brachypodium distachyon
Bradi3g36120 5.0kb upstream 5.0kb upstream 5000 false Bd3: 38120057-38125056 Brachypodium distachyon
Bradi3g36120 5.0kb downstream 5.0kb downstream 12745 true Bd3: 38125057-38137801 Brachypodium distachyon
Bradi3g36120 5.0kb downstream 5.0kb downstream 5000 false Bd3: 38132802-38137801 Brachypodium distachyon
Bradi3g36120 10.0kb upstream 10.0kb upstream 17745 true Bd3: 38115057-38132801 Brachypodium distachyon
Bradi3g36120 10.0kb upstream 10.0kb upstream 10000 false Bd3: 38115057-38125056 Brachypodium distachyon
Bradi3g36120 10.0kb downstream 10.0kb downstream 17745 true Bd3: 38125057-38142801 Brachypodium distachyon
Bradi3g36120 10.0kb downstream 10.0kb downstream 10000 false Bd3: 38132802-38142801 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570588 5269 Grass View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.03        
cufflinks 1.746        
cufflinks 1.338        
cufflinks 2.136        
cufflinks 1.087        
cufflinks 1.378        
cufflinks 1.21        
cufflinks 1.281        
cufflinks 1.327        
cufflinks 0.857        
cufflinks 1.292        
cufflinks 1.823        
cufflinks 2.644        
cufflinks 1.719        
cufflinks 2.694       High
cufflinks 1.832        
cufflinks 1.586        
cufflinks 0.044     Low Low
cufflinks 0.692        
cufflinks 0.471        
cufflinks 0.262       Low
cufflinks 1.148        
cufflinks 1.393        
cufflinks 1.551        
cufflinks 1.472        
cufflinks 1.316        
cufflinks 1.446        
cufflinks 0.981        
cufflinks 0.997        
cufflinks 0.492        

0 Strain