Gene : Bradi4g34170 B. distachyon v3.1
Defline:  (1 of 1) PTHR12919:SF20 - 28S RIBOSOMAL PROTEIN S16, MITOCHONDRIAL Genomic Order:  4394
Name:  ? Bradi4g34170 Secondary Identifier:  ? PAC:32785866
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g34170 0.5kb upstream 0.5kb upstream 2139 true Bd4: 39731120-39733258 Brachypodium distachyon
Bradi4g34170 0.5kb upstream 0.5kb upstream 500 false Bd4: 39731120-39731619 Brachypodium distachyon
Bradi4g34170 0.5kb downstream 0.5kb downstream 2139 true Bd4: 39731620-39733758 Brachypodium distachyon
Bradi4g34170 0.5kb downstream 0.5kb downstream 500 false Bd4: 39733259-39733758 Brachypodium distachyon
Bradi4g34170 1.0kb upstream 1.0kb upstream 2639 true Bd4: 39730620-39733258 Brachypodium distachyon
Bradi4g34170 1.0kb upstream 1.0kb upstream 1000 false Bd4: 39730620-39731619 Brachypodium distachyon
Bradi4g34170 1.0kb downstream 1.0kb downstream 2639 true Bd4: 39731620-39734258 Brachypodium distachyon
Bradi4g34170 1.0kb downstream 1.0kb downstream 1000 false Bd4: 39733259-39734258 Brachypodium distachyon
Bradi4g34170 2.0kb upstream 2.0kb upstream 3639 true Bd4: 39729620-39733258 Brachypodium distachyon
Bradi4g34170 2.0kb upstream 2.0kb upstream 2000 false Bd4: 39729620-39731619 Brachypodium distachyon
Bradi4g34170 2.0kb downstream 2.0kb downstream 3639 true Bd4: 39731620-39735258 Brachypodium distachyon
Bradi4g34170 2.0kb downstream 2.0kb downstream 2000 false Bd4: 39733259-39735258 Brachypodium distachyon
Bradi4g34170 5.0kb upstream 5.0kb upstream 6639 true Bd4: 39726620-39733258 Brachypodium distachyon
Bradi4g34170 5.0kb upstream 5.0kb upstream 5000 false Bd4: 39726620-39731619 Brachypodium distachyon
Bradi4g34170 5.0kb downstream 5.0kb downstream 6639 true Bd4: 39731620-39738258 Brachypodium distachyon
Bradi4g34170 5.0kb downstream 5.0kb downstream 5000 false Bd4: 39733259-39738258 Brachypodium distachyon
Bradi4g34170 10.0kb upstream 10.0kb upstream 11639 true Bd4: 39721620-39733258 Brachypodium distachyon
Bradi4g34170 10.0kb upstream 10.0kb upstream 10000 false Bd4: 39721620-39731619 Brachypodium distachyon
Bradi4g34170 10.0kb downstream 10.0kb downstream 11639 true Bd4: 39731620-39743258 Brachypodium distachyon
Bradi4g34170 10.0kb downstream 10.0kb downstream 10000 false Bd4: 39733259-39743258 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580342 5269 Grass View MSA
122051162 5273 Angiosperm View MSA
121348917 5274 Embryophyte View MSA
123426601 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.204     High  
cufflinks 20.786     High  
cufflinks 18.428     High  
cufflinks 30.501     High High
cufflinks 16.501     High  
cufflinks 17.227     High  
cufflinks 19.861     High  
cufflinks 14.662     High  
cufflinks 15.602     High  
cufflinks 29.677     High  
cufflinks 7.725       Low
cufflinks 11.78     High  
cufflinks 5.438       Low
cufflinks 6.782       Low
cufflinks 10.144     High Low
cufflinks 15.182     High  
cufflinks 26.267     High  
cufflinks 27.545     High  
cufflinks 19.307     High  
cufflinks 18.446     High  
cufflinks 40.312     High High
cufflinks 13.656     High  
cufflinks 13.229     High  
cufflinks 14.575     High  
cufflinks 23.693     High  
cufflinks 29.607     High  
cufflinks 6.969       Low
cufflinks 25.223     High  
cufflinks 21.147     High  
cufflinks 23.452     High  

0 Strain