Gene : Bradi3g36900 B. distachyon v3.1
Defline:  (1 of 5) PTHR11387 - CYTOCHROME C OXIDASE POLYPEPTIDE VIB Genomic Order:  4518
Name:  ? Bradi3g36900 Secondary Identifier:  ? PAC:32823074
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g36900 0.5kb upstream 0.5kb upstream 1391 true Bd3: 39003086-39004476 Brachypodium distachyon
Bradi3g36900 0.5kb upstream 0.5kb upstream 500 false Bd3: 39003977-39004476 Brachypodium distachyon
Bradi3g36900 0.5kb downstream 0.5kb downstream 1391 true Bd3: 39002586-39003976 Brachypodium distachyon
Bradi3g36900 0.5kb downstream 0.5kb downstream 500 false Bd3: 39002586-39003085 Brachypodium distachyon
Bradi3g36900 1.0kb upstream 1.0kb upstream 1891 true Bd3: 39003086-39004976 Brachypodium distachyon
Bradi3g36900 1.0kb upstream 1.0kb upstream 1000 false Bd3: 39003977-39004976 Brachypodium distachyon
Bradi3g36900 1.0kb downstream 1.0kb downstream 1891 true Bd3: 39002086-39003976 Brachypodium distachyon
Bradi3g36900 1.0kb downstream 1.0kb downstream 1000 false Bd3: 39002086-39003085 Brachypodium distachyon
Bradi3g36900 2.0kb upstream 2.0kb upstream 2891 true Bd3: 39003086-39005976 Brachypodium distachyon
Bradi3g36900 2.0kb upstream 2.0kb upstream 2000 false Bd3: 39003977-39005976 Brachypodium distachyon
Bradi3g36900 2.0kb downstream 2.0kb downstream 2891 true Bd3: 39001086-39003976 Brachypodium distachyon
Bradi3g36900 2.0kb downstream 2.0kb downstream 2000 false Bd3: 39001086-39003085 Brachypodium distachyon
Bradi3g36900 5.0kb upstream 5.0kb upstream 5891 true Bd3: 39003086-39008976 Brachypodium distachyon
Bradi3g36900 5.0kb upstream 5.0kb upstream 5000 false Bd3: 39003977-39008976 Brachypodium distachyon
Bradi3g36900 5.0kb downstream 5.0kb downstream 5891 true Bd3: 38998086-39003976 Brachypodium distachyon
Bradi3g36900 5.0kb downstream 5.0kb downstream 5000 false Bd3: 38998086-39003085 Brachypodium distachyon
Bradi3g36900 10.0kb upstream 10.0kb upstream 10891 true Bd3: 39003086-39013976 Brachypodium distachyon
Bradi3g36900 10.0kb upstream 10.0kb upstream 10000 false Bd3: 39003977-39013976 Brachypodium distachyon
Bradi3g36900 10.0kb downstream 10.0kb downstream 10891 true Bd3: 38993086-39003976 Brachypodium distachyon
Bradi3g36900 10.0kb downstream 10.0kb downstream 10000 false Bd3: 38993086-39003085 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124581416 5269 Grass View MSA
122042745 5273 Angiosperm View MSA
121350001 5274 Embryophyte View MSA
123426527 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.522        
cufflinks 8.493        
cufflinks 8.86        
cufflinks 8.986        
cufflinks 11.084     High  
cufflinks 7.808        
cufflinks 10.382     High  
cufflinks 8.229        
cufflinks 7.728        
cufflinks 9.116        
cufflinks 5.434       Low
cufflinks 6.745        
cufflinks 5.326       Low
cufflinks 5.26       Low
cufflinks 7.369        
cufflinks 7.022        
cufflinks 17.648     High High
cufflinks 10.128        
cufflinks 24.077     High High
cufflinks 9.241        
cufflinks 18.136     High High
cufflinks 6.499       Low
cufflinks 8.833        
cufflinks 8.048        
cufflinks 9.955     High  
cufflinks 7.652        
cufflinks 7.817        
cufflinks 10.36        
cufflinks 8.409        
cufflinks 14.194     High  

0 Strain