Gene : Bradi4g32490 B. distachyon v3.1
Defline:  (1 of 1) PTHR31100:SF1 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 17-RELATED Genomic Order:  4171
Name:  ? Bradi4g32490 Secondary Identifier:  ? PAC:32784085
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g32490 0.5kb upstream 0.5kb upstream 2973 true Bd4: 38043086-38046058 Brachypodium distachyon
Bradi4g32490 0.5kb upstream 0.5kb upstream 500 false Bd4: 38045559-38046058 Brachypodium distachyon
Bradi4g32490 0.5kb downstream 0.5kb downstream 2973 true Bd4: 38042586-38045558 Brachypodium distachyon
Bradi4g32490 0.5kb downstream 0.5kb downstream 500 false Bd4: 38042586-38043085 Brachypodium distachyon
Bradi4g32490 1.0kb upstream 1.0kb upstream 3473 true Bd4: 38043086-38046558 Brachypodium distachyon
Bradi4g32490 1.0kb upstream 1.0kb upstream 1000 false Bd4: 38045559-38046558 Brachypodium distachyon
Bradi4g32490 1.0kb downstream 1.0kb downstream 3473 true Bd4: 38042086-38045558 Brachypodium distachyon
Bradi4g32490 1.0kb downstream 1.0kb downstream 1000 false Bd4: 38042086-38043085 Brachypodium distachyon
Bradi4g32490 2.0kb upstream 2.0kb upstream 4473 true Bd4: 38043086-38047558 Brachypodium distachyon
Bradi4g32490 2.0kb upstream 2.0kb upstream 2000 false Bd4: 38045559-38047558 Brachypodium distachyon
Bradi4g32490 2.0kb downstream 2.0kb downstream 4473 true Bd4: 38041086-38045558 Brachypodium distachyon
Bradi4g32490 2.0kb downstream 2.0kb downstream 2000 false Bd4: 38041086-38043085 Brachypodium distachyon
Bradi4g32490 5.0kb upstream 5.0kb upstream 7473 true Bd4: 38043086-38050558 Brachypodium distachyon
Bradi4g32490 5.0kb upstream 5.0kb upstream 5000 false Bd4: 38045559-38050558 Brachypodium distachyon
Bradi4g32490 5.0kb downstream 5.0kb downstream 7473 true Bd4: 38038086-38045558 Brachypodium distachyon
Bradi4g32490 5.0kb downstream 5.0kb downstream 5000 false Bd4: 38038086-38043085 Brachypodium distachyon
Bradi4g32490 10.0kb upstream 10.0kb upstream 12473 true Bd4: 38043086-38055558 Brachypodium distachyon
Bradi4g32490 10.0kb upstream 10.0kb upstream 10000 false Bd4: 38045559-38055558 Brachypodium distachyon
Bradi4g32490 10.0kb downstream 10.0kb downstream 12473 true Bd4: 38033086-38045558 Brachypodium distachyon
Bradi4g32490 10.0kb downstream 10.0kb downstream 10000 false Bd4: 38033086-38043085 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124586532 5269 Grass View MSA
122046470 5273 Angiosperm View MSA
121310610 5274 Embryophyte View MSA
123348051 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.02     Low Low
cufflinks 0.187       High
cufflinks 0.109        
cufflinks 0.109        
cufflinks 0.089     Low  
cufflinks 0.06     Low  
cufflinks 0.144       High
cufflinks 0.06     Low  
cufflinks 0.112        
cufflinks 0.056     Low  
cufflinks 0.014     Low Low
cufflinks 0.038     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low Low
cufflinks 0.137        
cufflinks 0.017     Low Low
cufflinks 0.144     Low High
cufflinks 0.081     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.064     Low  
cufflinks 0.075     Low  
cufflinks 0.092        
cufflinks 0.068     Low  
cufflinks 0.056     Low  
cufflinks 0.06     Low  
cufflinks 0.01     Low Low
cufflinks 0.06     Low  
cufflinks 0.129        
cufflinks 0.091     Low  

0 Strain