Gene : Bradi3g43577 B. distachyon v3.1
Defline:  (1 of 1) PF13371//PF13414//PF13844 - Tetratricopeptide repeat (TPR_9) // TPR repeat (TPR_11) // Glycosyl transferase family 41 (Glyco_transf_41) Genomic Order:  5380
Name:  ? Bradi3g43577 Secondary Identifier:  ? PAC:32819175
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-7437 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g43577 0.5kb upstream 0.5kb upstream 10623 true Bd3: 44874402-44885024 Brachypodium distachyon
Bradi3g43577 0.5kb upstream 0.5kb upstream 500 false Bd3: 44884525-44885024 Brachypodium distachyon
Bradi3g43577 0.5kb downstream 0.5kb downstream 10623 true Bd3: 44873902-44884524 Brachypodium distachyon
Bradi3g43577 0.5kb downstream 0.5kb downstream 500 false Bd3: 44873902-44874401 Brachypodium distachyon
Bradi3g43577 1.0kb upstream 1.0kb upstream 11123 true Bd3: 44874402-44885524 Brachypodium distachyon
Bradi3g43577 1.0kb upstream 1.0kb upstream 1000 false Bd3: 44884525-44885524 Brachypodium distachyon
Bradi3g43577 1.0kb downstream 1.0kb downstream 11123 true Bd3: 44873402-44884524 Brachypodium distachyon
Bradi3g43577 1.0kb downstream 1.0kb downstream 1000 false Bd3: 44873402-44874401 Brachypodium distachyon
Bradi3g43577 2.0kb upstream 2.0kb upstream 12123 true Bd3: 44874402-44886524 Brachypodium distachyon
Bradi3g43577 2.0kb upstream 2.0kb upstream 2000 false Bd3: 44884525-44886524 Brachypodium distachyon
Bradi3g43577 2.0kb downstream 2.0kb downstream 12123 true Bd3: 44872402-44884524 Brachypodium distachyon
Bradi3g43577 2.0kb downstream 2.0kb downstream 2000 false Bd3: 44872402-44874401 Brachypodium distachyon
Bradi3g43577 5.0kb upstream 5.0kb upstream 15123 true Bd3: 44874402-44889524 Brachypodium distachyon
Bradi3g43577 5.0kb upstream 5.0kb upstream 5000 false Bd3: 44884525-44889524 Brachypodium distachyon
Bradi3g43577 5.0kb downstream 5.0kb downstream 15123 true Bd3: 44869402-44884524 Brachypodium distachyon
Bradi3g43577 5.0kb downstream 5.0kb downstream 5000 false Bd3: 44869402-44874401 Brachypodium distachyon
Bradi3g43577 10.0kb upstream 10.0kb upstream 20123 true Bd3: 44874402-44894524 Brachypodium distachyon
Bradi3g43577 10.0kb upstream 10.0kb upstream 10000 false Bd3: 44884525-44894524 Brachypodium distachyon
Bradi3g43577 10.0kb downstream 10.0kb downstream 20123 true Bd3: 44864402-44884524 Brachypodium distachyon
Bradi3g43577 10.0kb downstream 10.0kb downstream 10000 false Bd3: 44864402-44874401 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589128 5269 Grass View MSA
122047286 5273 Angiosperm View MSA
121344424 5274 Embryophyte View MSA
123428836 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.448     High  
cufflinks 21.056     High  
cufflinks 15.715     High  
cufflinks 16.267     High  
cufflinks 28.581     High  
cufflinks 17.293     High  
cufflinks 17.884     High  
cufflinks 16.834     High  
cufflinks 17.826     High  
cufflinks 9.282       Low
cufflinks 15.38     High  
cufflinks 16.833     High  
cufflinks 13.377     High  
cufflinks 9.918     High Low
cufflinks 12.979     High  
cufflinks 19.673     High  
cufflinks 10.432       Low
cufflinks 31.081     High High
cufflinks 57.266     High High
cufflinks 57.729     High High
cufflinks 17.254     High  
cufflinks 15.637     High  
cufflinks 21.89     High  
cufflinks 16.304     High  
cufflinks 14.749     High  
cufflinks 14.364     High  
cufflinks 13.699     High  
cufflinks 14.076     High  
cufflinks 13.235     High  
cufflinks 23.734     High  

0 Strain