Gene : Bradi3g44230 B. distachyon v3.1
Defline:  (1 of 1) 3.5.4.26//5.4.99.28 - tRNA pseudouridine(32) synthase / Pseudouridine synthase RluA Genomic Order:  5464
Name:  ? Bradi3g44230 Secondary Identifier:  ? PAC:32818191
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon RIBOSYN2-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g44230 0.5kb upstream 0.5kb upstream 8779 true Bd3: 45677653-45686431 Brachypodium distachyon
Bradi3g44230 0.5kb upstream 0.5kb upstream 500 false Bd3: 45677653-45678152 Brachypodium distachyon
Bradi3g44230 0.5kb downstream 0.5kb downstream 8779 true Bd3: 45678153-45686931 Brachypodium distachyon
Bradi3g44230 0.5kb downstream 0.5kb downstream 500 false Bd3: 45686432-45686931 Brachypodium distachyon
Bradi3g44230 1.0kb upstream 1.0kb upstream 9279 true Bd3: 45677153-45686431 Brachypodium distachyon
Bradi3g44230 1.0kb upstream 1.0kb upstream 1000 false Bd3: 45677153-45678152 Brachypodium distachyon
Bradi3g44230 1.0kb downstream 1.0kb downstream 9279 true Bd3: 45678153-45687431 Brachypodium distachyon
Bradi3g44230 1.0kb downstream 1.0kb downstream 1000 false Bd3: 45686432-45687431 Brachypodium distachyon
Bradi3g44230 2.0kb upstream 2.0kb upstream 10279 true Bd3: 45676153-45686431 Brachypodium distachyon
Bradi3g44230 2.0kb upstream 2.0kb upstream 2000 false Bd3: 45676153-45678152 Brachypodium distachyon
Bradi3g44230 2.0kb downstream 2.0kb downstream 10279 true Bd3: 45678153-45688431 Brachypodium distachyon
Bradi3g44230 2.0kb downstream 2.0kb downstream 2000 false Bd3: 45686432-45688431 Brachypodium distachyon
Bradi3g44230 5.0kb upstream 5.0kb upstream 13279 true Bd3: 45673153-45686431 Brachypodium distachyon
Bradi3g44230 5.0kb upstream 5.0kb upstream 5000 false Bd3: 45673153-45678152 Brachypodium distachyon
Bradi3g44230 5.0kb downstream 5.0kb downstream 13279 true Bd3: 45678153-45691431 Brachypodium distachyon
Bradi3g44230 5.0kb downstream 5.0kb downstream 5000 false Bd3: 45686432-45691431 Brachypodium distachyon
Bradi3g44230 10.0kb upstream 10.0kb upstream 18279 true Bd3: 45668153-45686431 Brachypodium distachyon
Bradi3g44230 10.0kb upstream 10.0kb upstream 10000 false Bd3: 45668153-45678152 Brachypodium distachyon
Bradi3g44230 10.0kb downstream 10.0kb downstream 18279 true Bd3: 45678153-45696431 Brachypodium distachyon
Bradi3g44230 10.0kb downstream 10.0kb downstream 10000 false Bd3: 45686432-45696431 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124570511 5269 Grass View MSA
122047695 5273 Angiosperm View MSA
121349064 5274 Embryophyte View MSA
123426945 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.245        
cufflinks 1.455        
cufflinks 1.623        
cufflinks 1.511        
cufflinks 1.179        
cufflinks 1.305        
cufflinks 1.22        
cufflinks 1.43        
cufflinks 1.331        
cufflinks 1.72       High
cufflinks 1.246        
cufflinks 1.141        
cufflinks 1.01       Low
cufflinks 1.209        
cufflinks 1.81       High
cufflinks 1.369        
cufflinks 1.501        
cufflinks 1.415        
cufflinks 0.916       Low
cufflinks 0.572       Low
cufflinks 1.095        
cufflinks 1.516        
cufflinks 1.224        
cufflinks 1.214        
cufflinks 1.44        
cufflinks 1.68        
cufflinks 1.307        
cufflinks 1.819       High
cufflinks 1.701       High
cufflinks 1.077        

0 Strain