Gene : Bradi3g44347 B. distachyon v3.1
Defline:  (1 of 1) KOG2164 - Predicted E3 ubiquitin ligase Genomic Order:  5486
Name:  ? Bradi3g44347 Secondary Identifier:  ? PAC:32816522
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g44347 0.5kb upstream 0.5kb upstream 7799 true Bd3: 45922102-45929900 Brachypodium distachyon
Bradi3g44347 0.5kb upstream 0.5kb upstream 500 false Bd3: 45929401-45929900 Brachypodium distachyon
Bradi3g44347 0.5kb downstream 0.5kb downstream 7799 true Bd3: 45921602-45929400 Brachypodium distachyon
Bradi3g44347 0.5kb downstream 0.5kb downstream 500 false Bd3: 45921602-45922101 Brachypodium distachyon
Bradi3g44347 1.0kb upstream 1.0kb upstream 8299 true Bd3: 45922102-45930400 Brachypodium distachyon
Bradi3g44347 1.0kb upstream 1.0kb upstream 1000 false Bd3: 45929401-45930400 Brachypodium distachyon
Bradi3g44347 1.0kb downstream 1.0kb downstream 8299 true Bd3: 45921102-45929400 Brachypodium distachyon
Bradi3g44347 1.0kb downstream 1.0kb downstream 1000 false Bd3: 45921102-45922101 Brachypodium distachyon
Bradi3g44347 2.0kb upstream 2.0kb upstream 9299 true Bd3: 45922102-45931400 Brachypodium distachyon
Bradi3g44347 2.0kb upstream 2.0kb upstream 2000 false Bd3: 45929401-45931400 Brachypodium distachyon
Bradi3g44347 2.0kb downstream 2.0kb downstream 9299 true Bd3: 45920102-45929400 Brachypodium distachyon
Bradi3g44347 2.0kb downstream 2.0kb downstream 2000 false Bd3: 45920102-45922101 Brachypodium distachyon
Bradi3g44347 5.0kb upstream 5.0kb upstream 12299 true Bd3: 45922102-45934400 Brachypodium distachyon
Bradi3g44347 5.0kb upstream 5.0kb upstream 5000 false Bd3: 45929401-45934400 Brachypodium distachyon
Bradi3g44347 5.0kb downstream 5.0kb downstream 12299 true Bd3: 45917102-45929400 Brachypodium distachyon
Bradi3g44347 5.0kb downstream 5.0kb downstream 5000 false Bd3: 45917102-45922101 Brachypodium distachyon
Bradi3g44347 10.0kb upstream 10.0kb upstream 17299 true Bd3: 45922102-45939400 Brachypodium distachyon
Bradi3g44347 10.0kb upstream 10.0kb upstream 10000 false Bd3: 45929401-45939400 Brachypodium distachyon
Bradi3g44347 10.0kb downstream 10.0kb downstream 17299 true Bd3: 45912102-45929400 Brachypodium distachyon
Bradi3g44347 10.0kb downstream 10.0kb downstream 10000 false Bd3: 45912102-45922101 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124577375 5269 Grass View MSA
122042542 5273 Angiosperm View MSA
121344560 5274 Embryophyte View MSA
123423758 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.353        
cufflinks 11.034     High High
cufflinks 7.625        
cufflinks 8.471        
cufflinks 11.064     High High
cufflinks 10.636     High  
cufflinks 10.084     High  
cufflinks 9.446     High  
cufflinks 10.46     High  
cufflinks 4.137       Low
cufflinks 11.388     High High
cufflinks 9.264     High  
cufflinks 9.297     High  
cufflinks 9.148     High  
cufflinks 8.114        
cufflinks 10.184     High  
cufflinks 6.494        
cufflinks 10.529        
cufflinks 7.811        
cufflinks 7.647        
cufflinks 7.509        
cufflinks 8.288        
cufflinks 10.787     High  
cufflinks 10.187     High  
cufflinks 9.096        
cufflinks 7.185        
cufflinks 10.883     High High
cufflinks 6.629        
cufflinks 7.14        
cufflinks 9.046        

0 Strain