Gene : Bradi3g44800 B. distachyon v3.1
Defline:  (1 of 1) PTHR31311:SF4 - GLYCOSYLTRANSFERASE 3-RELATED Genomic Order:  5544
Name:  ? Bradi3g44800 Secondary Identifier:  ? PAC:32816867
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-5936 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g44800 0.5kb upstream 0.5kb upstream 4618 true Bd3: 46506844-46511461 Brachypodium distachyon
Bradi3g44800 0.5kb upstream 0.5kb upstream 500 false Bd3: 46510962-46511461 Brachypodium distachyon
Bradi3g44800 0.5kb downstream 0.5kb downstream 4618 true Bd3: 46506344-46510961 Brachypodium distachyon
Bradi3g44800 0.5kb downstream 0.5kb downstream 500 false Bd3: 46506344-46506843 Brachypodium distachyon
Bradi3g44800 1.0kb upstream 1.0kb upstream 5118 true Bd3: 46506844-46511961 Brachypodium distachyon
Bradi3g44800 1.0kb upstream 1.0kb upstream 1000 false Bd3: 46510962-46511961 Brachypodium distachyon
Bradi3g44800 1.0kb downstream 1.0kb downstream 5118 true Bd3: 46505844-46510961 Brachypodium distachyon
Bradi3g44800 1.0kb downstream 1.0kb downstream 1000 false Bd3: 46505844-46506843 Brachypodium distachyon
Bradi3g44800 2.0kb upstream 2.0kb upstream 6118 true Bd3: 46506844-46512961 Brachypodium distachyon
Bradi3g44800 2.0kb upstream 2.0kb upstream 2000 false Bd3: 46510962-46512961 Brachypodium distachyon
Bradi3g44800 2.0kb downstream 2.0kb downstream 6118 true Bd3: 46504844-46510961 Brachypodium distachyon
Bradi3g44800 2.0kb downstream 2.0kb downstream 2000 false Bd3: 46504844-46506843 Brachypodium distachyon
Bradi3g44800 5.0kb upstream 5.0kb upstream 9118 true Bd3: 46506844-46515961 Brachypodium distachyon
Bradi3g44800 5.0kb upstream 5.0kb upstream 5000 false Bd3: 46510962-46515961 Brachypodium distachyon
Bradi3g44800 5.0kb downstream 5.0kb downstream 9118 true Bd3: 46501844-46510961 Brachypodium distachyon
Bradi3g44800 5.0kb downstream 5.0kb downstream 5000 false Bd3: 46501844-46506843 Brachypodium distachyon
Bradi3g44800 10.0kb upstream 10.0kb upstream 14118 true Bd3: 46506844-46520961 Brachypodium distachyon
Bradi3g44800 10.0kb upstream 10.0kb upstream 10000 false Bd3: 46510962-46520961 Brachypodium distachyon
Bradi3g44800 10.0kb downstream 10.0kb downstream 14118 true Bd3: 46496844-46510961 Brachypodium distachyon
Bradi3g44800 10.0kb downstream 10.0kb downstream 10000 false Bd3: 46496844-46506843 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124583010 5269 Grass View MSA
122047290 5273 Angiosperm View MSA
121349054 5274 Embryophyte View MSA
123428220 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.517        
cufflinks 0.544        
cufflinks 0.608        
cufflinks 0.446        
cufflinks 0.312        
cufflinks 0.46        
cufflinks 0.519        
cufflinks 0.473        
cufflinks 0.48        
cufflinks 0.446        
cufflinks 0.194       Low
cufflinks 0.532        
cufflinks 0.179       Low
cufflinks 0.164       Low
cufflinks 0.347        
cufflinks 0.521        
cufflinks 0.579        
cufflinks 1.541       High
cufflinks 0.707        
cufflinks 0.223       Low
cufflinks 1.083       High
cufflinks 0.576        
cufflinks 0.461        
cufflinks 0.483        
cufflinks 0.484        
cufflinks 0.561        
cufflinks 0.338        
cufflinks 0.582        
cufflinks 0.55        
cufflinks 1.019       High

0 Strain