Gene : Bradi3g41530 B. distachyon v3.1
Defline:  (1 of 2) K09602 - ubiquitin thioesterase protein OTUB1 [EC:3.4.19.12] (OTUB1) Genomic Order:  5122
Name:  ? Bradi3g41530 Secondary Identifier:  ? PAC:32818881
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g41530 0.5kb upstream 0.5kb upstream 4822 true Bd3: 43217212-43222033 Brachypodium distachyon
Bradi3g41530 0.5kb upstream 0.5kb upstream 500 false Bd3: 43221534-43222033 Brachypodium distachyon
Bradi3g41530 0.5kb downstream 0.5kb downstream 4822 true Bd3: 43216712-43221533 Brachypodium distachyon
Bradi3g41530 0.5kb downstream 0.5kb downstream 500 false Bd3: 43216712-43217211 Brachypodium distachyon
Bradi3g41530 1.0kb upstream 1.0kb upstream 5322 true Bd3: 43217212-43222533 Brachypodium distachyon
Bradi3g41530 1.0kb upstream 1.0kb upstream 1000 false Bd3: 43221534-43222533 Brachypodium distachyon
Bradi3g41530 1.0kb downstream 1.0kb downstream 5322 true Bd3: 43216212-43221533 Brachypodium distachyon
Bradi3g41530 1.0kb downstream 1.0kb downstream 1000 false Bd3: 43216212-43217211 Brachypodium distachyon
Bradi3g41530 2.0kb upstream 2.0kb upstream 6322 true Bd3: 43217212-43223533 Brachypodium distachyon
Bradi3g41530 2.0kb upstream 2.0kb upstream 2000 false Bd3: 43221534-43223533 Brachypodium distachyon
Bradi3g41530 2.0kb downstream 2.0kb downstream 6322 true Bd3: 43215212-43221533 Brachypodium distachyon
Bradi3g41530 2.0kb downstream 2.0kb downstream 2000 false Bd3: 43215212-43217211 Brachypodium distachyon
Bradi3g41530 5.0kb upstream 5.0kb upstream 9322 true Bd3: 43217212-43226533 Brachypodium distachyon
Bradi3g41530 5.0kb upstream 5.0kb upstream 5000 false Bd3: 43221534-43226533 Brachypodium distachyon
Bradi3g41530 5.0kb downstream 5.0kb downstream 9322 true Bd3: 43212212-43221533 Brachypodium distachyon
Bradi3g41530 5.0kb downstream 5.0kb downstream 5000 false Bd3: 43212212-43217211 Brachypodium distachyon
Bradi3g41530 10.0kb upstream 10.0kb upstream 14322 true Bd3: 43217212-43231533 Brachypodium distachyon
Bradi3g41530 10.0kb upstream 10.0kb upstream 10000 false Bd3: 43221534-43231533 Brachypodium distachyon
Bradi3g41530 10.0kb downstream 10.0kb downstream 14322 true Bd3: 43207212-43221533 Brachypodium distachyon
Bradi3g41530 10.0kb downstream 10.0kb downstream 10000 false Bd3: 43207212-43217211 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124587618 5269 Grass View MSA
122043006 5273 Angiosperm View MSA
121344850 5274 Embryophyte View MSA
123424451 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.336        
cufflinks 3.778        
cufflinks 5.27        
cufflinks 3.588        
cufflinks 4.199        
cufflinks 3.583        
cufflinks 3.803        
cufflinks 3.61        
cufflinks 3.5        
cufflinks 7.033       High
cufflinks 4.376        
cufflinks 3.25        
cufflinks 3.202        
cufflinks 3.54        
cufflinks 2.806       Low
cufflinks 3.573        
cufflinks 4.543        
cufflinks 4.723        
cufflinks 6.867       High
cufflinks 4.672        
cufflinks 4.625        
cufflinks 5.805       High
cufflinks 3.431        
cufflinks 3.695        
cufflinks 3.7        
cufflinks 6.118       High
cufflinks 4.094        
cufflinks 6.639       High
cufflinks 6.004       High
cufflinks 4.022        

0 Strain