Gene : Bradi4g32600 B. distachyon v3.1
Defline:  (1 of 2) 6.3.2.6 - Phosphoribosylaminoimidazolesuccinocarboxamide synthase / SAICARs Genomic Order:  4184
Name:  ? Bradi4g32600 Secondary Identifier:  ? PAC:32790787
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon PWY-6124 Brachypodium distachyon pathologic  
Bdistachyon PWY-841 Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi4g32600 0.5kb upstream 0.5kb upstream 5580 true Bd4: 38186635-38192214 Brachypodium distachyon
Bradi4g32600 0.5kb upstream 0.5kb upstream 500 false Bd4: 38186635-38187134 Brachypodium distachyon
Bradi4g32600 0.5kb downstream 0.5kb downstream 5580 true Bd4: 38187135-38192714 Brachypodium distachyon
Bradi4g32600 0.5kb downstream 0.5kb downstream 500 false Bd4: 38192215-38192714 Brachypodium distachyon
Bradi4g32600 1.0kb upstream 1.0kb upstream 6080 true Bd4: 38186135-38192214 Brachypodium distachyon
Bradi4g32600 1.0kb upstream 1.0kb upstream 1000 false Bd4: 38186135-38187134 Brachypodium distachyon
Bradi4g32600 1.0kb downstream 1.0kb downstream 6080 true Bd4: 38187135-38193214 Brachypodium distachyon
Bradi4g32600 1.0kb downstream 1.0kb downstream 1000 false Bd4: 38192215-38193214 Brachypodium distachyon
Bradi4g32600 2.0kb upstream 2.0kb upstream 7080 true Bd4: 38185135-38192214 Brachypodium distachyon
Bradi4g32600 2.0kb upstream 2.0kb upstream 2000 false Bd4: 38185135-38187134 Brachypodium distachyon
Bradi4g32600 2.0kb downstream 2.0kb downstream 7080 true Bd4: 38187135-38194214 Brachypodium distachyon
Bradi4g32600 2.0kb downstream 2.0kb downstream 2000 false Bd4: 38192215-38194214 Brachypodium distachyon
Bradi4g32600 5.0kb upstream 5.0kb upstream 10080 true Bd4: 38182135-38192214 Brachypodium distachyon
Bradi4g32600 5.0kb upstream 5.0kb upstream 5000 false Bd4: 38182135-38187134 Brachypodium distachyon
Bradi4g32600 5.0kb downstream 5.0kb downstream 10080 true Bd4: 38187135-38197214 Brachypodium distachyon
Bradi4g32600 5.0kb downstream 5.0kb downstream 5000 false Bd4: 38192215-38197214 Brachypodium distachyon
Bradi4g32600 10.0kb upstream 10.0kb upstream 15080 true Bd4: 38177135-38192214 Brachypodium distachyon
Bradi4g32600 10.0kb upstream 10.0kb upstream 10000 false Bd4: 38177135-38187134 Brachypodium distachyon
Bradi4g32600 10.0kb downstream 10.0kb downstream 15080 true Bd4: 38187135-38202214 Brachypodium distachyon
Bradi4g32600 10.0kb downstream 10.0kb downstream 10000 false Bd4: 38192215-38202214 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124589731 5269 Grass View MSA
122044442 5273 Angiosperm View MSA
121346335 5274 Embryophyte View MSA
123424061 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.154        
cufflinks 2.244        
cufflinks 1.972        
cufflinks 2.024        
cufflinks 1.092        
cufflinks 1.963        
cufflinks 2.316        
cufflinks 1.736        
cufflinks 2.024        
cufflinks 1.071       Low
cufflinks 2.214        
cufflinks 1.815        
cufflinks 1.239        
cufflinks 2.175        
cufflinks 0.996       Low
cufflinks 2.116        
cufflinks 2.198        
cufflinks 2.887       High
cufflinks 2.317        
cufflinks 0.507       Low
cufflinks 2.626       High
cufflinks 1.394        
cufflinks 1.844        
cufflinks 2.165        
cufflinks 2.325        
cufflinks 1.332        
cufflinks 1.989        
cufflinks 1.276        
cufflinks 1.584        
cufflinks 1.409        

0 Strain