Gene : Bradi3g42420 B. distachyon v3.1
Defline:  (1 of 2) PTHR10585//PTHR10585:SF35 - ER LUMEN PROTEIN RETAINING RECEPTOR // SUBFAMILY NOT NAMED Genomic Order:  5232
Name:  ? Bradi3g42420 Secondary Identifier:  ? PAC:32821040
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g42420 0.5kb upstream 0.5kb upstream 4482 true Bd3: 43801120-43805601 Brachypodium distachyon
Bradi3g42420 0.5kb upstream 0.5kb upstream 500 false Bd3: 43805102-43805601 Brachypodium distachyon
Bradi3g42420 0.5kb downstream 0.5kb downstream 4482 true Bd3: 43800620-43805101 Brachypodium distachyon
Bradi3g42420 0.5kb downstream 0.5kb downstream 500 false Bd3: 43800620-43801119 Brachypodium distachyon
Bradi3g42420 1.0kb upstream 1.0kb upstream 4982 true Bd3: 43801120-43806101 Brachypodium distachyon
Bradi3g42420 1.0kb upstream 1.0kb upstream 1000 false Bd3: 43805102-43806101 Brachypodium distachyon
Bradi3g42420 1.0kb downstream 1.0kb downstream 4982 true Bd3: 43800120-43805101 Brachypodium distachyon
Bradi3g42420 1.0kb downstream 1.0kb downstream 1000 false Bd3: 43800120-43801119 Brachypodium distachyon
Bradi3g42420 2.0kb upstream 2.0kb upstream 5982 true Bd3: 43801120-43807101 Brachypodium distachyon
Bradi3g42420 2.0kb upstream 2.0kb upstream 2000 false Bd3: 43805102-43807101 Brachypodium distachyon
Bradi3g42420 2.0kb downstream 2.0kb downstream 5982 true Bd3: 43799120-43805101 Brachypodium distachyon
Bradi3g42420 2.0kb downstream 2.0kb downstream 2000 false Bd3: 43799120-43801119 Brachypodium distachyon
Bradi3g42420 5.0kb upstream 5.0kb upstream 8982 true Bd3: 43801120-43810101 Brachypodium distachyon
Bradi3g42420 5.0kb upstream 5.0kb upstream 5000 false Bd3: 43805102-43810101 Brachypodium distachyon
Bradi3g42420 5.0kb downstream 5.0kb downstream 8982 true Bd3: 43796120-43805101 Brachypodium distachyon
Bradi3g42420 5.0kb downstream 5.0kb downstream 5000 false Bd3: 43796120-43801119 Brachypodium distachyon
Bradi3g42420 10.0kb upstream 10.0kb upstream 13982 true Bd3: 43801120-43815101 Brachypodium distachyon
Bradi3g42420 10.0kb upstream 10.0kb upstream 10000 false Bd3: 43805102-43815101 Brachypodium distachyon
Bradi3g42420 10.0kb downstream 10.0kb downstream 13982 true Bd3: 43791120-43805101 Brachypodium distachyon
Bradi3g42420 10.0kb downstream 10.0kb downstream 10000 false Bd3: 43791120-43801119 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124585975 5269 Grass View MSA
122049823 5273 Angiosperm View MSA
121349491 5274 Embryophyte View MSA
123426417 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.1        
cufflinks 8.484        
cufflinks 10.349     High  
cufflinks 8.933        
cufflinks 6.186       Low
cufflinks 7.442        
cufflinks 8.803        
cufflinks 8.599        
cufflinks 7.857        
cufflinks 12.464     High  
cufflinks 7.155        
cufflinks 7.502        
cufflinks 7.144        
cufflinks 6.547        
cufflinks 6.497        
cufflinks 8.011        
cufflinks 8.311        
cufflinks 18.371     High High
cufflinks 17.098     High High
cufflinks 6.023       Low
cufflinks 14.082     High High
cufflinks 9.236        
cufflinks 7.907        
cufflinks 7.487        
cufflinks 7.573        
cufflinks 11.945     High  
cufflinks 7.807        
cufflinks 11.548     High  
cufflinks 9.667        
cufflinks 12.725     High High

0 Strain