Gene : Bradi3g42960 B. distachyon v3.1
Defline:  (1 of 1) 4.2.1.9 - Dihydroxy-acid dehydratase Genomic Order:  5297
Name:  ? Bradi3g42960 Secondary Identifier:  ? PAC:32822257
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Bdistachyon BRANCHED-CHAIN-AA-SYN-PWY Brachypodium distachyon pathologic  
Bdistachyon ILEUSYN-PWY Brachypodium distachyon pathologic  
Bdistachyon PWY-3001 Brachypodium distachyon pathologic  
Bdistachyon VALSYN-PWY Brachypodium distachyon pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g42960 0.5kb upstream 0.5kb upstream 5141 true Bd3: 44074158-44079298 Brachypodium distachyon
Bradi3g42960 0.5kb upstream 0.5kb upstream 500 false Bd3: 44074158-44074657 Brachypodium distachyon
Bradi3g42960 0.5kb downstream 0.5kb downstream 5141 true Bd3: 44074658-44079798 Brachypodium distachyon
Bradi3g42960 0.5kb downstream 0.5kb downstream 500 false Bd3: 44079299-44079798 Brachypodium distachyon
Bradi3g42960 1.0kb upstream 1.0kb upstream 5641 true Bd3: 44073658-44079298 Brachypodium distachyon
Bradi3g42960 1.0kb upstream 1.0kb upstream 1000 false Bd3: 44073658-44074657 Brachypodium distachyon
Bradi3g42960 1.0kb downstream 1.0kb downstream 5641 true Bd3: 44074658-44080298 Brachypodium distachyon
Bradi3g42960 1.0kb downstream 1.0kb downstream 1000 false Bd3: 44079299-44080298 Brachypodium distachyon
Bradi3g42960 2.0kb upstream 2.0kb upstream 6641 true Bd3: 44072658-44079298 Brachypodium distachyon
Bradi3g42960 2.0kb upstream 2.0kb upstream 2000 false Bd3: 44072658-44074657 Brachypodium distachyon
Bradi3g42960 2.0kb downstream 2.0kb downstream 6641 true Bd3: 44074658-44081298 Brachypodium distachyon
Bradi3g42960 2.0kb downstream 2.0kb downstream 2000 false Bd3: 44079299-44081298 Brachypodium distachyon
Bradi3g42960 5.0kb upstream 5.0kb upstream 9641 true Bd3: 44069658-44079298 Brachypodium distachyon
Bradi3g42960 5.0kb upstream 5.0kb upstream 5000 false Bd3: 44069658-44074657 Brachypodium distachyon
Bradi3g42960 5.0kb downstream 5.0kb downstream 9641 true Bd3: 44074658-44084298 Brachypodium distachyon
Bradi3g42960 5.0kb downstream 5.0kb downstream 5000 false Bd3: 44079299-44084298 Brachypodium distachyon
Bradi3g42960 10.0kb upstream 10.0kb upstream 14641 true Bd3: 44064658-44079298 Brachypodium distachyon
Bradi3g42960 10.0kb upstream 10.0kb upstream 10000 false Bd3: 44064658-44074657 Brachypodium distachyon
Bradi3g42960 10.0kb downstream 10.0kb downstream 14641 true Bd3: 44074658-44089298 Brachypodium distachyon
Bradi3g42960 10.0kb downstream 10.0kb downstream 10000 false Bd3: 44079299-44089298 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124569802 5269 Grass View MSA
122041651 5273 Angiosperm View MSA
121345047 5274 Embryophyte View MSA
123424997 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.32        
cufflinks 10.568     High High
cufflinks 10.073        
cufflinks 9.027        
cufflinks 4.07        
cufflinks 8.644        
cufflinks 8.875        
cufflinks 6.225        
cufflinks 7.433        
cufflinks 4.464        
cufflinks 2.589       Low
cufflinks 6.429        
cufflinks 1.654       Low
cufflinks 2.368       Low
cufflinks 2.521       Low
cufflinks 8.842        
cufflinks 6.728        
cufflinks 15.446     High High
cufflinks 7.519        
cufflinks 1.235       Low
cufflinks 5.88        
cufflinks 7.278        
cufflinks 5.901        
cufflinks 6.249        
cufflinks 8.546        
cufflinks 7.432        
cufflinks 2.38       Low
cufflinks 6.344        
cufflinks 5.847        
cufflinks 8.301        

0 Strain