Gene : Bradi3g47472 B. distachyon v3.1
Defline:  (1 of 1) PTHR10073:SF12 - MISMATCH REPAIR ENDONUCLEASE PMS2 Genomic Order:  5889
Name:  ? Bradi3g47472 Secondary Identifier:  ? PAC:32819182
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g47472 0.5kb upstream 0.5kb upstream 6782 true Bd3: 48885259-48892040 Brachypodium distachyon
Bradi3g47472 0.5kb upstream 0.5kb upstream 500 false Bd3: 48891541-48892040 Brachypodium distachyon
Bradi3g47472 0.5kb downstream 0.5kb downstream 6782 true Bd3: 48884759-48891540 Brachypodium distachyon
Bradi3g47472 0.5kb downstream 0.5kb downstream 500 false Bd3: 48884759-48885258 Brachypodium distachyon
Bradi3g47472 1.0kb upstream 1.0kb upstream 7282 true Bd3: 48885259-48892540 Brachypodium distachyon
Bradi3g47472 1.0kb upstream 1.0kb upstream 1000 false Bd3: 48891541-48892540 Brachypodium distachyon
Bradi3g47472 1.0kb downstream 1.0kb downstream 7282 true Bd3: 48884259-48891540 Brachypodium distachyon
Bradi3g47472 1.0kb downstream 1.0kb downstream 1000 false Bd3: 48884259-48885258 Brachypodium distachyon
Bradi3g47472 2.0kb upstream 2.0kb upstream 8282 true Bd3: 48885259-48893540 Brachypodium distachyon
Bradi3g47472 2.0kb upstream 2.0kb upstream 2000 false Bd3: 48891541-48893540 Brachypodium distachyon
Bradi3g47472 2.0kb downstream 2.0kb downstream 8282 true Bd3: 48883259-48891540 Brachypodium distachyon
Bradi3g47472 2.0kb downstream 2.0kb downstream 2000 false Bd3: 48883259-48885258 Brachypodium distachyon
Bradi3g47472 5.0kb upstream 5.0kb upstream 11282 true Bd3: 48885259-48896540 Brachypodium distachyon
Bradi3g47472 5.0kb upstream 5.0kb upstream 5000 false Bd3: 48891541-48896540 Brachypodium distachyon
Bradi3g47472 5.0kb downstream 5.0kb downstream 11282 true Bd3: 48880259-48891540 Brachypodium distachyon
Bradi3g47472 5.0kb downstream 5.0kb downstream 5000 false Bd3: 48880259-48885258 Brachypodium distachyon
Bradi3g47472 10.0kb upstream 10.0kb upstream 16282 true Bd3: 48885259-48901540 Brachypodium distachyon
Bradi3g47472 10.0kb upstream 10.0kb upstream 10000 false Bd3: 48891541-48901540 Brachypodium distachyon
Bradi3g47472 10.0kb downstream 10.0kb downstream 16282 true Bd3: 48875259-48891540 Brachypodium distachyon
Bradi3g47472 10.0kb downstream 10.0kb downstream 10000 false Bd3: 48875259-48885258 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588392 5269 Grass View MSA
122044481 5273 Angiosperm View MSA
121344102 5274 Embryophyte View MSA
123426273 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.307        
cufflinks 0.882        
cufflinks 0.778        
cufflinks 0.724        
cufflinks 0.152       Low
cufflinks 0.658        
cufflinks 0.659        
cufflinks 0.543        
cufflinks 0.675        
cufflinks 0.34        
cufflinks 0.254        
cufflinks 0.482        
cufflinks 0.116       Low
cufflinks 0.126       Low
cufflinks 0.09       Low
cufflinks 0.584        
cufflinks 0.339        
cufflinks 1.408       High
cufflinks 0.571        
cufflinks 0.156       Low
cufflinks 0.505        
cufflinks 0.69        
cufflinks 0.475        
cufflinks 0.495        
cufflinks 0.657        
cufflinks 0.575        
cufflinks 0.164       Low
cufflinks 0.56        
cufflinks 0.614        
cufflinks 0.752        

0 Strain