Gene : Bradi3g48020 B. distachyon v3.1
Defline:  (1 of 1) KOG3068 - mRNA splicing factor Genomic Order:  5958
Name:  ? Bradi3g48020 Secondary Identifier:  ? PAC:32812445
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g48020 0.5kb upstream 0.5kb upstream 3182 true Bd3: 49330118-49333299 Brachypodium distachyon
Bradi3g48020 0.5kb upstream 0.5kb upstream 500 false Bd3: 49332800-49333299 Brachypodium distachyon
Bradi3g48020 0.5kb downstream 0.5kb downstream 3182 true Bd3: 49329618-49332799 Brachypodium distachyon
Bradi3g48020 0.5kb downstream 0.5kb downstream 500 false Bd3: 49329618-49330117 Brachypodium distachyon
Bradi3g48020 1.0kb upstream 1.0kb upstream 3682 true Bd3: 49330118-49333799 Brachypodium distachyon
Bradi3g48020 1.0kb upstream 1.0kb upstream 1000 false Bd3: 49332800-49333799 Brachypodium distachyon
Bradi3g48020 1.0kb downstream 1.0kb downstream 3682 true Bd3: 49329118-49332799 Brachypodium distachyon
Bradi3g48020 1.0kb downstream 1.0kb downstream 1000 false Bd3: 49329118-49330117 Brachypodium distachyon
Bradi3g48020 2.0kb upstream 2.0kb upstream 4682 true Bd3: 49330118-49334799 Brachypodium distachyon
Bradi3g48020 2.0kb upstream 2.0kb upstream 2000 false Bd3: 49332800-49334799 Brachypodium distachyon
Bradi3g48020 2.0kb downstream 2.0kb downstream 4682 true Bd3: 49328118-49332799 Brachypodium distachyon
Bradi3g48020 2.0kb downstream 2.0kb downstream 2000 false Bd3: 49328118-49330117 Brachypodium distachyon
Bradi3g48020 5.0kb upstream 5.0kb upstream 7682 true Bd3: 49330118-49337799 Brachypodium distachyon
Bradi3g48020 5.0kb upstream 5.0kb upstream 5000 false Bd3: 49332800-49337799 Brachypodium distachyon
Bradi3g48020 5.0kb downstream 5.0kb downstream 7682 true Bd3: 49325118-49332799 Brachypodium distachyon
Bradi3g48020 5.0kb downstream 5.0kb downstream 5000 false Bd3: 49325118-49330117 Brachypodium distachyon
Bradi3g48020 10.0kb upstream 10.0kb upstream 12682 true Bd3: 49330118-49342799 Brachypodium distachyon
Bradi3g48020 10.0kb upstream 10.0kb upstream 10000 false Bd3: 49332800-49342799 Brachypodium distachyon
Bradi3g48020 10.0kb downstream 10.0kb downstream 12682 true Bd3: 49320118-49332799 Brachypodium distachyon
Bradi3g48020 10.0kb downstream 10.0kb downstream 10000 false Bd3: 49320118-49330117 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124574276 5269 Grass View MSA
122043978 5273 Angiosperm View MSA
121345749 5274 Embryophyte View MSA
123424977 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.168       High
cufflinks 3.775        
cufflinks 3.71        
cufflinks 3.55        
cufflinks 4.283        
cufflinks 3.761        
cufflinks 3.917        
cufflinks 3.177        
cufflinks 3.811        
cufflinks 4.096        
cufflinks 3.132        
cufflinks 2.887       Low
cufflinks 2.533       Low
cufflinks 2.675       Low
cufflinks 3.313        
cufflinks 3.79        
cufflinks 4.316        
cufflinks 5.176        
cufflinks 6.427       High
cufflinks 6.574       High
cufflinks 4.729        
cufflinks 3.334        
cufflinks 3.044       Low
cufflinks 3.609        
cufflinks 3.78        
cufflinks 3.297        
cufflinks 3.459        
cufflinks 3.964        
cufflinks 3.516        
cufflinks 4.824        

0 Strain