Gene : Bradi3g47936 B. distachyon v3.1

Defline:  (1 of 32) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  5945
Name:  ? Bradi3g47936 Secondary Identifier:  ? PAC:32820276

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g47936 0.5kb upstream 0.5kb upstream 2973 true Bd3: 49254825-49257797 Brachypodium distachyon
Bradi3g47936 0.5kb upstream 0.5kb upstream 500 false Bd3: 49254825-49255324 Brachypodium distachyon
Bradi3g47936 0.5kb downstream 0.5kb downstream 2973 true Bd3: 49255325-49258297 Brachypodium distachyon
Bradi3g47936 0.5kb downstream 0.5kb downstream 500 false Bd3: 49257798-49258297 Brachypodium distachyon
Bradi3g47936 1.0kb upstream 1.0kb upstream 3473 true Bd3: 49254325-49257797 Brachypodium distachyon
Bradi3g47936 1.0kb upstream 1.0kb upstream 1000 false Bd3: 49254325-49255324 Brachypodium distachyon
Bradi3g47936 1.0kb downstream 1.0kb downstream 3473 true Bd3: 49255325-49258797 Brachypodium distachyon
Bradi3g47936 1.0kb downstream 1.0kb downstream 1000 false Bd3: 49257798-49258797 Brachypodium distachyon
Bradi3g47936 2.0kb upstream 2.0kb upstream 4473 true Bd3: 49253325-49257797 Brachypodium distachyon
Bradi3g47936 2.0kb upstream 2.0kb upstream 2000 false Bd3: 49253325-49255324 Brachypodium distachyon
Bradi3g47936 2.0kb downstream 2.0kb downstream 4473 true Bd3: 49255325-49259797 Brachypodium distachyon
Bradi3g47936 2.0kb downstream 2.0kb downstream 2000 false Bd3: 49257798-49259797 Brachypodium distachyon
Bradi3g47936 5.0kb upstream 5.0kb upstream 7473 true Bd3: 49250325-49257797 Brachypodium distachyon
Bradi3g47936 5.0kb upstream 5.0kb upstream 5000 false Bd3: 49250325-49255324 Brachypodium distachyon
Bradi3g47936 5.0kb downstream 5.0kb downstream 7473 true Bd3: 49255325-49262797 Brachypodium distachyon
Bradi3g47936 5.0kb downstream 5.0kb downstream 5000 false Bd3: 49257798-49262797 Brachypodium distachyon
Bradi3g47936 10.0kb upstream 10.0kb upstream 12473 true Bd3: 49245325-49257797 Brachypodium distachyon
Bradi3g47936 10.0kb upstream 10.0kb upstream 10000 false Bd3: 49245325-49255324 Brachypodium distachyon
Bradi3g47936 10.0kb downstream 10.0kb downstream 12473 true Bd3: 49255325-49267797 Brachypodium distachyon
Bradi3g47936 10.0kb downstream 10.0kb downstream 10000 false Bd3: 49257798-49267797 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124573961 5269 Grass View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.548        
cufflinks 5.465        
cufflinks 5.229        
cufflinks 3.628        
cufflinks 0.993       Low
cufflinks 5.295        
cufflinks 4.108        
cufflinks 3.962        
cufflinks 5.197        
cufflinks 2.97        
cufflinks 5.454        
cufflinks 5.379        
cufflinks 4.887        
cufflinks 4.607        
cufflinks 2.732        
cufflinks 4.61        
cufflinks 1.482        
cufflinks 3.964        
cufflinks 0.859       Low
cufflinks 0.852       Low
cufflinks 1.401       Low
cufflinks 5.848        
cufflinks 4.225        
cufflinks 4.915        
cufflinks 4.29        
cufflinks 4.329        
cufflinks 4.992        
cufflinks 4.664        
cufflinks 5.163        
cufflinks 3.916        

0 Strain