Gene : Bradi3g48637 B. distachyon v3.1
Defline:  (1 of 3) PF04410 - Gar1/Naf1 RNA binding region (Gar1) Genomic Order:  6034
Name:  ? Bradi3g48637 Secondary Identifier:  ? PAC:32818080
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g48637 0.5kb upstream 0.5kb upstream 3913 true Bd3: 49788255-49792167 Brachypodium distachyon
Bradi3g48637 0.5kb upstream 0.5kb upstream 500 false Bd3: 49791668-49792167 Brachypodium distachyon
Bradi3g48637 0.5kb downstream 0.5kb downstream 3913 true Bd3: 49787755-49791667 Brachypodium distachyon
Bradi3g48637 0.5kb downstream 0.5kb downstream 500 false Bd3: 49787755-49788254 Brachypodium distachyon
Bradi3g48637 1.0kb upstream 1.0kb upstream 4413 true Bd3: 49788255-49792667 Brachypodium distachyon
Bradi3g48637 1.0kb upstream 1.0kb upstream 1000 false Bd3: 49791668-49792667 Brachypodium distachyon
Bradi3g48637 1.0kb downstream 1.0kb downstream 4413 true Bd3: 49787255-49791667 Brachypodium distachyon
Bradi3g48637 1.0kb downstream 1.0kb downstream 1000 false Bd3: 49787255-49788254 Brachypodium distachyon
Bradi3g48637 2.0kb upstream 2.0kb upstream 5413 true Bd3: 49788255-49793667 Brachypodium distachyon
Bradi3g48637 2.0kb upstream 2.0kb upstream 2000 false Bd3: 49791668-49793667 Brachypodium distachyon
Bradi3g48637 2.0kb downstream 2.0kb downstream 5413 true Bd3: 49786255-49791667 Brachypodium distachyon
Bradi3g48637 2.0kb downstream 2.0kb downstream 2000 false Bd3: 49786255-49788254 Brachypodium distachyon
Bradi3g48637 5.0kb upstream 5.0kb upstream 8413 true Bd3: 49788255-49796667 Brachypodium distachyon
Bradi3g48637 5.0kb upstream 5.0kb upstream 5000 false Bd3: 49791668-49796667 Brachypodium distachyon
Bradi3g48637 5.0kb downstream 5.0kb downstream 8413 true Bd3: 49783255-49791667 Brachypodium distachyon
Bradi3g48637 5.0kb downstream 5.0kb downstream 5000 false Bd3: 49783255-49788254 Brachypodium distachyon
Bradi3g48637 10.0kb upstream 10.0kb upstream 13413 true Bd3: 49788255-49801667 Brachypodium distachyon
Bradi3g48637 10.0kb upstream 10.0kb upstream 10000 false Bd3: 49791668-49801667 Brachypodium distachyon
Bradi3g48637 10.0kb downstream 10.0kb downstream 13413 true Bd3: 49778255-49791667 Brachypodium distachyon
Bradi3g48637 10.0kb downstream 10.0kb downstream 10000 false Bd3: 49778255-49788254 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041036 5273 Angiosperm View MSA
124589364 5269 Grass View MSA
121343792 5274 Embryophyte View MSA
123424387 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.277        
cufflinks 2.569       High
cufflinks 1.937        
cufflinks 2.846       High
cufflinks 0.396       Low
cufflinks 1.734        
cufflinks 1.809        
cufflinks 1.663        
cufflinks 1.648        
cufflinks 0.58        
cufflinks 1.221        
cufflinks 1.198        
cufflinks 0.589        
cufflinks 0.724        
cufflinks 0.948        
cufflinks 1.62        
cufflinks 0.876        
cufflinks 2.527        
cufflinks 0.992        
cufflinks 0.111     Low Low
cufflinks 1.43        
cufflinks 0.832        
cufflinks 1.574        
cufflinks 1.448        
cufflinks 2.007        
cufflinks 0.987        
cufflinks 0.945        
cufflinks 0.919        
cufflinks 0.618        
cufflinks 1.963        

0 Strain