Gene : Bradi3g48600 B. distachyon v3.1
Defline:  (1 of 3) PTHR10744//PTHR10744:SF10 - 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER Genomic Order:  6030
Name:  ? Bradi3g48600 Secondary Identifier:  ? PAC:32819159
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g48600 0.5kb upstream 0.5kb upstream 3195 true Bd3: 49764811-49768005 Brachypodium distachyon
Bradi3g48600 0.5kb upstream 0.5kb upstream 500 false Bd3: 49767506-49768005 Brachypodium distachyon
Bradi3g48600 0.5kb downstream 0.5kb downstream 3195 true Bd3: 49764311-49767505 Brachypodium distachyon
Bradi3g48600 0.5kb downstream 0.5kb downstream 500 false Bd3: 49764311-49764810 Brachypodium distachyon
Bradi3g48600 1.0kb upstream 1.0kb upstream 3695 true Bd3: 49764811-49768505 Brachypodium distachyon
Bradi3g48600 1.0kb upstream 1.0kb upstream 1000 false Bd3: 49767506-49768505 Brachypodium distachyon
Bradi3g48600 1.0kb downstream 1.0kb downstream 3695 true Bd3: 49763811-49767505 Brachypodium distachyon
Bradi3g48600 1.0kb downstream 1.0kb downstream 1000 false Bd3: 49763811-49764810 Brachypodium distachyon
Bradi3g48600 2.0kb upstream 2.0kb upstream 4695 true Bd3: 49764811-49769505 Brachypodium distachyon
Bradi3g48600 2.0kb upstream 2.0kb upstream 2000 false Bd3: 49767506-49769505 Brachypodium distachyon
Bradi3g48600 2.0kb downstream 2.0kb downstream 4695 true Bd3: 49762811-49767505 Brachypodium distachyon
Bradi3g48600 2.0kb downstream 2.0kb downstream 2000 false Bd3: 49762811-49764810 Brachypodium distachyon
Bradi3g48600 5.0kb upstream 5.0kb upstream 7695 true Bd3: 49764811-49772505 Brachypodium distachyon
Bradi3g48600 5.0kb upstream 5.0kb upstream 5000 false Bd3: 49767506-49772505 Brachypodium distachyon
Bradi3g48600 5.0kb downstream 5.0kb downstream 7695 true Bd3: 49759811-49767505 Brachypodium distachyon
Bradi3g48600 5.0kb downstream 5.0kb downstream 5000 false Bd3: 49759811-49764810 Brachypodium distachyon
Bradi3g48600 10.0kb upstream 10.0kb upstream 12695 true Bd3: 49764811-49777505 Brachypodium distachyon
Bradi3g48600 10.0kb upstream 10.0kb upstream 10000 false Bd3: 49767506-49777505 Brachypodium distachyon
Bradi3g48600 10.0kb downstream 10.0kb downstream 12695 true Bd3: 49754811-49767505 Brachypodium distachyon
Bradi3g48600 10.0kb downstream 10.0kb downstream 10000 false Bd3: 49754811-49764810 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124580462 5269 Grass View MSA
122044220 5273 Angiosperm View MSA
121344694 5274 Embryophyte View MSA
123428242 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.678     High  
cufflinks 21.496     High  
cufflinks 15.091     High  
cufflinks 23.772     High  
cufflinks 7.587       Low
cufflinks 17.364     High  
cufflinks 19.536     High  
cufflinks 13.681     High  
cufflinks 15.305     High  
cufflinks 11.824     High  
cufflinks 6.459       Low
cufflinks 12.413     High  
cufflinks 3.832       Low
cufflinks 4.801       Low
cufflinks 10.285     High  
cufflinks 16.92     High  
cufflinks 18.446     High  
cufflinks 27.355     High High
cufflinks 18.796     High  
cufflinks 4.852       Low
cufflinks 28.379     High High
cufflinks 11.904     High  
cufflinks 13.792     High  
cufflinks 16.849     High  
cufflinks 22.149     High  
cufflinks 15.919     High  
cufflinks 7.934       Low
cufflinks 13.629     High  
cufflinks 12.056     High  
cufflinks 21.332     High  

0 Strain