Gene : Bradi3g49410 B. distachyon v3.1
Defline:  (1 of 6) PF05757 - Oxygen evolving enhancer protein 3 (PsbQ) (PsbQ) Genomic Order:  6138
Name:  ? Bradi3g49410 Secondary Identifier:  ? PAC:32821635
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g49410 0.5kb upstream 0.5kb upstream 4401 true Bd3: 50532298-50536698 Brachypodium distachyon
Bradi3g49410 0.5kb upstream 0.5kb upstream 500 false Bd3: 50532298-50532797 Brachypodium distachyon
Bradi3g49410 0.5kb downstream 0.5kb downstream 4401 true Bd3: 50532798-50537198 Brachypodium distachyon
Bradi3g49410 0.5kb downstream 0.5kb downstream 500 false Bd3: 50536699-50537198 Brachypodium distachyon
Bradi3g49410 1.0kb upstream 1.0kb upstream 4901 true Bd3: 50531798-50536698 Brachypodium distachyon
Bradi3g49410 1.0kb upstream 1.0kb upstream 1000 false Bd3: 50531798-50532797 Brachypodium distachyon
Bradi3g49410 1.0kb downstream 1.0kb downstream 4901 true Bd3: 50532798-50537698 Brachypodium distachyon
Bradi3g49410 1.0kb downstream 1.0kb downstream 1000 false Bd3: 50536699-50537698 Brachypodium distachyon
Bradi3g49410 2.0kb upstream 2.0kb upstream 5901 true Bd3: 50530798-50536698 Brachypodium distachyon
Bradi3g49410 2.0kb upstream 2.0kb upstream 2000 false Bd3: 50530798-50532797 Brachypodium distachyon
Bradi3g49410 2.0kb downstream 2.0kb downstream 5901 true Bd3: 50532798-50538698 Brachypodium distachyon
Bradi3g49410 2.0kb downstream 2.0kb downstream 2000 false Bd3: 50536699-50538698 Brachypodium distachyon
Bradi3g49410 5.0kb upstream 5.0kb upstream 8901 true Bd3: 50527798-50536698 Brachypodium distachyon
Bradi3g49410 5.0kb upstream 5.0kb upstream 5000 false Bd3: 50527798-50532797 Brachypodium distachyon
Bradi3g49410 5.0kb downstream 5.0kb downstream 8901 true Bd3: 50532798-50541698 Brachypodium distachyon
Bradi3g49410 5.0kb downstream 5.0kb downstream 5000 false Bd3: 50536699-50541698 Brachypodium distachyon
Bradi3g49410 10.0kb upstream 10.0kb upstream 13901 true Bd3: 50522798-50536698 Brachypodium distachyon
Bradi3g49410 10.0kb upstream 10.0kb upstream 10000 false Bd3: 50522798-50532797 Brachypodium distachyon
Bradi3g49410 10.0kb downstream 10.0kb downstream 13901 true Bd3: 50532798-50546698 Brachypodium distachyon
Bradi3g49410 10.0kb downstream 10.0kb downstream 10000 false Bd3: 50536699-50546698 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124588669 5269 Grass View MSA
122049386 5273 Angiosperm View MSA
121311379 5274 Embryophyte View MSA
123348684 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.438        
cufflinks 0.413        
cufflinks 0.378        
cufflinks 0.542        
cufflinks 0.527        
cufflinks 0.334        
cufflinks 0.355        
cufflinks 0.265       Low
cufflinks 0.353        
cufflinks 0.236       Low
cufflinks 0.431        
cufflinks 0.286        
cufflinks 0.222       Low
cufflinks 0.389        
cufflinks 0.46        
cufflinks 0.36        
cufflinks 0.478        
cufflinks 0.581        
cufflinks 0.446        
cufflinks 1.676       High
cufflinks 0.922       High
cufflinks 0.28        
cufflinks 0.286        
cufflinks 0.256       Low
cufflinks 0.445        
cufflinks 0.504        
cufflinks 0.65        
cufflinks 0.51        
cufflinks 0.584        
cufflinks 0.545        

0 Strain